BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,590,218	T→C	intergenic (‑217/+116)	ydeT ← / ← yneL	fimbrial usher domain‑containing protein YdeT/putative HTH‑type transcriptional regulator YneL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,590,218	0	T	C	100.0%	412.0 / NA	111	intergenic (‑217/+116)	ydeT/yneL	fimbrial usher domain‑containing protein YdeT/putative HTH‑type transcriptional regulator YneL
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (49/62); total (49/62)

Only 100 of 111 total aligned reads displayed.

CAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGTCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGA  >  NC_000913/1590084‑1590351

caaGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGa                                                                                                                                  <  1:862640/140‑1 (MQ=255)

  aGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGGCGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGaaa                                                                                                                                >  2:1203336/1‑140 (MQ=255)

      tATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTc                                                                                                                            <  2:476441/140‑1 (MQ=255)

      tATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTc                                                                                                                            <  2:416728/140‑1 (MQ=255)

       aTTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCa                                                                                                                           >  2:1301088/1‑140 (MQ=255)

        ttGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCaa                                                                                                                          <  2:360191/140‑1 (MQ=255)

          gctgcACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAaga                                                                                                                        <  1:395039/140‑1 (MQ=255)

           ctgcACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAagag                                                                                                                       >  1:327785/1‑140 (MQ=255)

             gcACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCt                                                                                                                     >  1:979818/1‑140 (MQ=255)

               aCTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTAc                                                                                                                   <  2:216834/140‑1 (MQ=255)

                 ttgttgAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAATGTCAAGAGCTACCa                                                                                                                 <  1:281371/140‑1 (MQ=255)

                 ttgttgAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCa                                                                                                                 <  2:380521/140‑1 (MQ=255)

                 ttgttgAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCa                                                                                                                 <  2:804481/140‑1 (MQ=255)

                  tgttgAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCaa                                                                                                                >  2:708370/1‑140 (MQ=255)

                   gttgAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACAAAt                                                                                                               >  1:770331/1‑140 (MQ=255)

                    ttgAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGGCGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATg                                                                                                              <  1:1203336/140‑1 (MQ=255)

                        agagagTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAaga                                                                                                                        <  2:278708/126‑1 (MQ=255)

                        agagagTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAaga                                                                                                                        >  1:278708/1‑126 (MQ=255)

                        agagagTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTa                                                                                                          >  1:577573/1‑140 (MQ=255)

                          agagTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAat                                                                                                        <  1:165039/140‑1 (MQ=255)

                          agagTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAat                                                                                                        <  1:1137276/140‑1 (MQ=255)

                          agagTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAat                                                                                                        <  1:1163023/140‑1 (MQ=255)

                           gagTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCAAGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAagag                                                                                                                       >  2:725470/1‑124 (MQ=255)

                            agTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAatat                                                                                                      >  2:378091/1‑140 (MQ=255)

                              tATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATgg                                                                                                    >  1:924147/1‑140 (MQ=255)

                                 ttGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCta                                                                                                 >  2:967977/1‑140 (MQ=255)

                                   gCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCtata                                                                                               >  2:1260019/1‑140 (MQ=255)

                                   gCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCtata                                                                                               >  2:262653/1‑140 (MQ=255)

                                    cAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAata                                                                                                       >  2:246069/1‑131 (MQ=255)

                                    cAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAata                                                                                                       <  1:246069/131‑1 (MQ=255)

                                     aaaaaCATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATaaa                                                                                             <  1:223298/140‑1 (MQ=255)

                                      aaaaCATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAAt                                                                                            >  1:997482/1‑140 (MQ=255)

                                      aaaaCATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAAt                                                                                            >  1:205783/1‑140 (MQ=255)

                                       aaaCATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATc                                                                                           <  1:378091/140‑1 (MQ=255)

                                        aaCATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCa                                                                                          <  2:577573/140‑1 (MQ=255)

                                        aaCATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCa                                                                                          >  1:734754/1‑140 (MQ=255)

                                             tttATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGc                                                                                     <  2:226452/140‑1 (MQ=255)

                                               tATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTa                                                                                   <  2:979818/140‑1 (MQ=255)

                                                   tCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGt                                                                               <  2:981070/140‑1 (MQ=255)

                                                           tAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGttt                                                                       >  2:234716/1‑140 (MQ=255)

                                                             aCATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTttgc                                                                     <  1:262653/140‑1 (MQ=255)

                                                              cATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTttgct                                                                    >  2:1005593/1‑140 (MQ=255)

                                                              cATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTttgct                                                                    >  1:593485/1‑140 (MQ=255)

                                                              cATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTttgct                                                                    >  2:73995/1‑140 (MQ=255)

                                                                tGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCt                                                                                    <  1:1109863/122‑1 (MQ=255)

                                                                tGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCt                                                                                    >  2:1109863/1‑122 (MQ=255)

                                                                tGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTttgcttg                                                                  >  1:805157/1‑140 (MQ=255)

                                                                 gACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTttgcttgc                                                                 >  1:1173080/1‑140 (MQ=255)

                                                                  aCGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTtgcttgct                                                                <  1:1005593/140‑1 (MQ=255)

                                                                  aCGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTtgcttgct                                                                <  1:73995/140‑1 (MQ=255)

                                                                   cGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTg                                                               >  2:731307/1‑140 (MQ=255)

                                                                   cGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTg                                                               >  1:578689/1‑140 (MQ=255)

                                                                      tttCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGaaa                                                            >  1:907994/1‑140 (MQ=255)

                                                                       ttCATTATGCATGTTATTTATAAACCGTGACTAAACAGGATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAAc                                                           >  2:231116/1‑140 (MQ=255)

                                                                       ttCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAAc                                                           <  2:724042/140‑1 (MQ=255)

                                                                       ttCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAAc                                                           <  1:731307/140‑1 (MQ=255)

                                                                         cATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTa                                                         <  1:190429/140‑1 (MQ=255)

                                                                            tATGCATGTTATTTATAGACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAaca                                                      >  2:432006/1‑140 (MQ=255)

                                                                              tGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACAcc                                                    >  1:721987/1‑140 (MQ=255)

                                                                                cATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATG‑TTGCTTGCTGAAACTAACACCGaa                                                 <  2:696529/140‑1 (MQ=255)

                                                                                 aTGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGaa                                                 <  1:306698/140‑1 (MQ=255)

                                                                                 aTGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGaa                                                 <  2:907994/140‑1 (MQ=255)

                                                                                 aTGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGaa                                                 <  1:140854/140‑1 (MQ=255)

                                                                                 aTGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGaa                                                 <  1:1260019/140‑1 (MQ=255)

                                                                                 aTGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGaa                                                 <  1:1222845/140‑1 (MQ=255)

                                                                                     tatttatAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGc                                             <  2:415062/140‑1 (MQ=255)

                                                                                      atttatAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGct                                            <  2:997475/140‑1 (MQ=255)

                                                                                      atttatAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGct                                            <  1:1022764/140‑1 (MQ=255)

                                                                                      atttatAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGct                                            <  1:1099096/140‑1 (MQ=255)

                                                                                      atttatAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGct                                            <  1:1147024/140‑1 (MQ=255)

                                                                                      atttatAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGct                                            <  1:786740/140‑1 (MQ=255)

                                                                                      atttatAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACAAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGct                                            <  2:770331/140‑1 (MQ=255)

                                                                                            aaaCCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATGAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAAc                                      >  1:257552/1‑140 (MQ=255)

                                                                                             aaCCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTa                                         >  2:174506/1‑136 (MQ=255)

                                                                                             aaCCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTa                                         <  1:174506/136‑1 (MQ=255)

                                                                                             aaCCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACa                                     >  2:85045/1‑140 (MQ=255)

                                                                                                cGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGAt                                  <  2:174803/140‑1 (MQ=255)

                                                                                                cGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGAt                                  <  1:708370/140‑1 (MQ=255)

                                                                                                cGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGAt                                  <  2:24915/140‑1 (MQ=255)

                                                                                                 gTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATa                                 <  1:85045/140‑1 (MQ=255)

                                                                                                 gTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATa                                 >  2:872471/1‑140 (MQ=255)

                                                                                                     cTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTg                             <  1:581683/140‑1 (MQ=255)

                                                                                                     cTAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCAATAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTg                             <  1:513170/140‑1 (MQ=255)

                                                                                                      tAAACAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGc                            <  2:1173080/140‑1 (MQ=255)

                                                                                                         aCAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAgg                         >  1:215168/1‑140 (MQ=255)

                                                                                                         aCAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAgg                         >  2:1189681/1‑140 (MQ=255)

                                                                                                          cAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAggg                        <  1:812699/140‑1 (MQ=255)

                                                                                                          cAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAggg                        <  1:872471/140‑1 (MQ=255)

                                                                                                          cAGAATATTATTGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAggg                        <  2:805157/140‑1 (MQ=255)

                                                                                                                    ttGCGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAg              >  2:1341388/1‑140 (MQ=255)

                                                                                                                       cGAACAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAggg                        >  2:1249133/1‑127 (MQ=255)

                                                                                                                         aaCAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTc         >  1:521097/1‑140 (MQ=255)

                                                                                                                         aaCAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTc         >  1:658476/1‑140 (MQ=255)

                                                                                                                         aaCAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTc         >  1:82452/1‑140 (MQ=255)

                                                                                                                           cAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCg       >  2:851707/1‑140 (MQ=255)

                                                                                                                           cAAGGGAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCg       >  2:892562/1‑140 (MQ=255)

                                                                                                                                gAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGa  <  2:215168/140‑1 (MQ=255)

                                                                                                                                gAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGa  <  1:253926/140‑1 (MQ=255)

                                                                                                                                gAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGa  <  2:578689/140‑1 (MQ=255)

                                                                                                                                gAAGTGCCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGa  <  1:758019/140‑1 (MQ=255)

CAAGTTTATTGCTGCACTTGTTGAAGAGAGTATTTGCAAAAACATTTTATGTCGCTAAATAACATGACGATTTCATTATGCATGTTATTTATAAACCGTGACTAAACAGAATATTATTGCGAACAAGGGAAGTGTCAGGAAAGGTCAAGAGCTACCAATGGTTAATATGGCTATAAATCATTAGCTATGGTTAATGTTTGCTTGCTGAAACTAACACCGAATTGCTCTAAACAGATAAGTGCAGGGTTTATTAAAGCTGTCCGACAGA  >  NC_000913/1590084‑1590351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`