BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,467,734	T→C	intergenic (+32/‑121)	intS → / → yfdG	CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase/CPS‑53 (KpLE1) prophage; putative bactoprenol‑linked glucose translocase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,467,734	0	T	C	100.0%	385.6 / NA	105	intergenic (+32/‑121)	intS/yfdG	CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase/CPS‑53 (KpLE1) prophage; putative bactoprenol‑linked glucose translocase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (50/55); total (50/55)

Only 100 of 105 total aligned reads displayed.

ACGGCGGATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTG  >  NC_000913/2467599‑2467870

aCGGCGGATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTg                                                                                                                                      <  2:1348600/140‑1 (MQ=255)

 cggcggATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAACCTTGc                                                                                                                                     >  2:675517/1‑140 (MQ=255)

    cggATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAAt                                                                                                                                  >  2:479586/1‑140 (MQ=255)

     ggATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATc                                                                                                                                 <  2:77068/140‑1 (MQ=255)

      gATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAGCGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGGACAAAGCCTTGCAATcc                                                                                                                                >  2:1215058/1‑140 (MQ=255)

           gtgCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGc                                                                                                                           <  1:202344/140‑1 (MQ=255)

            tgCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCa                                                                                                                          >  2:65305/1‑140 (MQ=255)

             gCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCaa                                                                                                                         <  1:1042830/140‑1 (MQ=255)

                tGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGc                                                                                                                      >  2:280242/1‑140 (MQ=255)

                tGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGc                                                                                                                      >  1:509639/1‑140 (MQ=255)

                 gggATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCt                                                                                                                     >  2:228536/1‑140 (MQ=255)

                   gATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGTTGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCttt                                                                                                                   <  1:340473/140‑1 (MQ=255)

                   gATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCttt                                                                                                                   <  1:848174/140‑1 (MQ=255)

                   gATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCttt                                                                                                                   <  1:833750/140‑1 (MQ=255)

                   gATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCttt                                                                                                                   >  2:848174/1‑140 (MQ=255)

                    aTTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTtg                                                                                                                  <  2:768331/140‑1 (MQ=255)

                     tttACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTtgt                                                                                                                 <  1:290875/140‑1 (MQ=255)

                      ttACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTtgtg                                                                                                                <  2:508619/140‑1 (MQ=255)

                       tACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTtgtgt                                                                                                               >  1:778845/1‑140 (MQ=255)

                          aaCCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGta                                                                                                            <  1:1215058/140‑1 (MQ=255)

                             cATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATaa                                                                                                         >  2:33461/1‑140 (MQ=255)

                             cATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATaa                                                                                                         >  2:39102/1‑140 (MQ=255)

                             cATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATACAGTGCAAAGCTTTGTGTGTATaa                                                                                                         >  2:609423/1‑140 (MQ=255)

                              aTGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCttt                                                                                                                   <  2:495591/129‑1 (MQ=255)

                              aTGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCttt                                                                                                                   >  1:495591/1‑129 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTtgtgtg                                                                                                              <  2:1073977/133‑1 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTtgtgtg                                                                                                              >  1:1073977/1‑133 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGt                                                                                                       >  2:1240768/1‑140 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGt                                                                                                       >  2:428252/1‑140 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGt                                                                                                       >  1:1278268/1‑140 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGt                                                                                                       >  1:1312065/1‑140 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGt                                                                                                       <  2:627257/140‑1 (MQ=255)

                               tGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGt                                                                                                       >  1:169868/1‑140 (MQ=255)

                                  tCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGtttt                                                                                                    >  1:46328/1‑140 (MQ=255)

                                         ctcGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATACAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCtcat                                                                                             <  1:609423/140‑1 (MQ=255)

                                           cGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCtcatca                                                                                           >  1:916451/1‑140 (MQ=255)

                                           cGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCtcatca                                                                                           >  1:647063/1‑140 (MQ=255)

                                           cGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCtcatca                                                                                           >  1:1190096/1‑140 (MQ=255)

                                             aTAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAc                                                                                         <  1:973841/140‑1 (MQ=255)

                                              tAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAcc                                                                                        <  1:479586/140‑1 (MQ=255)

                                              tAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAcc                                                                                        <  1:1120360/140‑1 (MQ=255)

                                              tAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAcc                                                                                        >  2:1120360/1‑140 (MQ=255)

                                                aaCGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACcac                                                                                      >  2:378009/1‑140 (MQ=255)

                                                  cGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAcc                                                                                        <  1:387789/136‑1 (MQ=255)

                                                  cGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAcc                                                                                        >  2:387789/1‑136 (MQ=255)

                                                  cGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAg                                                                                    >  2:508195/1‑140 (MQ=255)

                                                   gCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGc                                                                                   <  2:1278268/140‑1 (MQ=255)

                                                    cAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAcc                                                                                        <  1:551455/134‑1 (MQ=255)

                                                    cAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAAcc                                                                                        >  2:551455/1‑134 (MQ=255)

                                                      gagaAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAg                                                                                >  2:506676/1‑140 (MQ=255)

                                                            tgatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcga                                                                          <  2:1065941/140‑1 (MQ=255)

                                                            tgatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcga                                                                          <  2:907479/140‑1 (MQ=255)

                                                            tgatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcga                                                                          <  1:1240768/140‑1 (MQ=255)

                                                             gatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcgat                                                                         <  1:65305/140‑1 (MQ=255)

                                                             gatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcgat                                                                         <  2:916451/140‑1 (MQ=255)

                                                             gatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcgat                                                                         <  2:1190096/140‑1 (MQ=255)

                                                             gatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcgat                                                                         <  2:567006/140‑1 (MQ=255)

                                                             gatgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcgat                                                                         <  2:647063/140‑1 (MQ=255)

                                                              atgCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTatcgatc                                                                        >  2:190378/1‑140 (MQ=255)

                                                                  aaTGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGAtt                                                                    <  1:506676/140‑1 (MQ=255)

                                                                         ggCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACtt                                                             <  2:1055666/140‑1 (MQ=255)

                                                                           cGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTgg                                                           >  1:258488/1‑140 (MQ=255)

                                                                              aCTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGgatg                                                        >  2:1099448/1‑140 (MQ=255)

                                                                                tGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGgatgat                                                      <  1:1099448/140‑1 (MQ=255)

                                                                                 ggCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATa                                                     <  2:760850/140‑1 (MQ=255)

                                                                                            aaGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTcc                                          >  1:1085588/1‑140 (MQ=255)

                                                                                              ggTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGga                                                          <  2:1163001/122‑1 (MQ=255)

                                                                                              ggTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGga                                                          >  1:1163001/1‑122 (MQ=255)

                                                                                              ggTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCtt                                        <  1:675517/140‑1 (MQ=255)

                                                                                                 ggAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGa                                     >  1:309693/1‑140 (MQ=255)

                                                                                                  gAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAGGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGat                                    <  1:997104/140‑1 (MQ=255)

                                                                                                    gTGAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGatta                                  <  1:39102/140‑1 (MQ=255)

                                                                                                      gAGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGattatt                                >  1:1238041/1‑140 (MQ=255)

                                                                                                       aGCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGAttatta                               <  1:1186781/140‑1 (MQ=255)

                                                                                                        gCGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAg                              <  2:290179/140‑1 (MQ=255)

                                                                                                         cGACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGc                             >  2:1277344/1‑140 (MQ=255)

                                                                                                          gACCTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCt                            <  2:309693/140‑1 (MQ=255)

                                                                                                           aCCTTAACAACTATCGAATAGCACAAAGCCTTGCAA‑CCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGa                          <  1:1102472/140‑1 (MQ=255)

                                                                                                            ccTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCtt                                        >  1:883009/1‑126 (MQ=255)

                                                                                                            ccTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCtt                                        <  2:883009/126‑1 (MQ=255)

                                                                                                            ccTTAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGa                          <  2:536092/140‑1 (MQ=255)

                                                                                                               tAACAACTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATag                       <  2:46328/140‑1 (MQ=255)

                                                                                                                   aacTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATagaaga                   <  2:97245/140‑1 (MQ=255)

                                                                                                                   aacTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATagaaga                   <  1:1277344/140‑1 (MQ=255)

                                                                                                                    acTATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAgaagaa                  <  1:228536/140‑1 (MQ=255)

                                                                                                                      tATCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAAt                >  2:487056/1‑140 (MQ=255)

                                                                                                                       aTCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGAttatta                               >  2:1171384/1‑124 (MQ=255)

                                                                                                                       aTCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGAttatta                               <  1:1171384/124‑1 (MQ=255)

                                                                                                                       aTCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATg               >  2:292224/1‑140 (MQ=255)

                                                                                                                        tCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGt              >  2:603780/1‑140 (MQ=255)

                                                                                                                        tCGAATAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGt              >  2:875210/1‑140 (MQ=255)

                                                                                                                             tAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATagaaga                   >  1:658609/1‑130 (MQ=255)

                                                                                                                             tAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATagaaga                   <  2:658609/130‑1 (MQ=255)

                                                                                                                             tAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAg         >  2:401058/1‑140 (MQ=255)

                                                                                                                             tAGCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAg         >  2:1152706/1‑140 (MQ=255)

                                                                                                                               gCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATag                       >  2:535793/1‑124 (MQ=255)

                                                                                                                               gCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATag                       <  1:535793/124‑1 (MQ=255)

                                                                                                                               gCACAAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAGCt       <  1:33461/140‑1 (MQ=255)

                                                                                                                                  caAAGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTAtt    >  1:552564/1‑140 (MQ=255)

                                                                                                                                    aaGCCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTg  <  1:508195/140‑1 (MQ=255)

ACGGCGGATCTGTGCGTGGGATTTACAACCATGCTCAGTATCTCGATAAACGCAGAGAAATGATGCAATGGTGGGCGGACTGGCTTGATGAGAAGGTGGAGTGAGCGACCTTAACAACTATCGAATAGCACAAAGTCTTGCAATCCAGTGCAAAGCTTTGTGTGTATAAGTTTTGTCTCATCAACCACAGCAAGTATCGATCGATTAAGACTTGGATGATAGACTTCATTCCTTTGATTATTAGCTGATAGAAGAAATGTTAAAGCTATTTG  >  NC_000913/2467599‑2467870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`