| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,022 | 1 | . | G | 93.8% | 218.7 / 6.8 | 65 | intergenic (‑141/+47) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Reads supporting (aligned to +/- strand): ref base . (3/1); new base G (24/37); total (27/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 | |||||||||||
CATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTC > NC_000913/379891‑380153 | ctcatcatctgcatgcaatatactatagggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCg > 1:294555‑M1/126‑140 (MQ=255)ctcatcatctgcatgcaatatactatagggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCg < 2:294555‑M1/15‑1 (MQ=255) atcatctgcatgcaatatactatagggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCa < 1:926083‑M1/18‑1 (MQ=255) catgcaatatactatagggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgc < 2:983307‑M1/26‑1 (MQ=255) catgcaatatactatagggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgc < 1:776373‑M1/26‑1 (MQ=255) caatatactatagggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAgg < 2:522298‑M1/25‑1 (MQ=255) caatatactatagggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAgg > 1:522298‑M1/111‑135 (MQ=255) agggggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgg < 2:531844‑M1/41‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGTAGGGAAGGCCGCCCCGGATAgcgggcgg < 2:609670‑M1/45‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGTCGCCCCGGATAgcgggcgg < 1:701115‑M1/45‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg < 1:111354‑M1/45‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg < 1:868068‑M1/45‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg < 2:271458‑M1/45‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg < 2:310317‑M1/45‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg < 1:278305‑M1/45‑1 (MQ=255) ggggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGggcggc > 1:881928‑M1/96‑140 (MQ=255) ggtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCa < 1:460468‑M1/47‑1 (MQ=255) gtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcggg > 1:715005‑M1/93‑134 (MQ=255) gtattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcggg < 2:715005‑M1/42‑1 (MQ=255) tattctatatgtcaatgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGa > 1:983307‑M1/92‑140 (MQ=255) tgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTc < 2:189680‑M1/64‑1 (MQ=255) tgcatacccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTc < 2:171975‑M1/64‑1 (MQ=255) acccccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGt < 2:242876‑M1/69‑1 (MQ=255) cccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAg < 1:535178‑M1/72‑1 (MQ=255) ccctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa > 2:535178‑M1/68‑140 (MQ=255) cctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGAc < 2:358251‑M1/74‑1 (MQ=255) cctatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGAc < 1:738265‑M1/74‑1 (MQ=255) tatagtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACgg < 1:516026‑M1/76‑1 (MQ=255) agtatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt > 1:171975‑M1/62‑140 (MQ=255) tatataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc > 1:271458‑M1/60‑140 (MQ=255) tataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 2:712260‑M1/81‑1 (MQ=255) tataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc > 1:712260‑M1/58‑138 (MQ=255) tataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCaa < 1:82378‑M1/83‑1 (MQ=255) tataacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCaa < 1:664379‑M1/83‑1 (MQ=255) aacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGtt < 1:24526‑M1/86‑1 (MQ=255) aacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCa > 1:209566‑M1/55‑135 (MQ=255) aacactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCa < 2:209566‑M1/81‑1 (MQ=255) tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAg > 2:485438/1‑140 (MQ=255) cactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa < 1:83981‑M1/73‑1 (MQ=255) cactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa > 2:83981‑M1/53‑125 (MQ=255) cactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGc < 1:655795‑M1/88‑1 (MQ=255) cactggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGc < 2:247262‑M1/88‑1 (MQ=255) cactggagaataaaatttatccggtgaatgtggtcggaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa < 1:92105‑M1/89‑1 (MQ=255) actggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa > 2:460468‑M1/52‑140 (MQ=255) tggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGTCGGGCTGCAAGttgctga < 1:65003‑M1/91‑4 (MQ=255) tggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGa < 1:788223‑M1/91‑1 (MQ=255) tggagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGa < 1:791238‑M1/91‑1 (MQ=255) gagaataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGAcc < 2:350254‑M1/93‑1 (MQ=255) ataaaatttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGTAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa > 1:609670‑M1/44‑140 (MQ=255) tttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGTCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAatca > 2:701115‑M1/38‑140 (MQ=255) ttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAatcat > 2:24526‑M1/37‑140 (MQ=255) tatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCTGACCGTTAAAatcatc > 2:65003‑M1/36‑140 (MQ=255) tatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAatcatc > 2:278305‑M1/36‑140 (MQ=255) ccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGt > 2:516026‑M1/33‑140 (MQ=255) ggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTg > 2:776373‑M1/31‑140 (MQ=255) tgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTggg > 1:358251‑M1/29‑140 (MQ=255) tgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTggg > 1:531844‑M1/29‑140 (MQ=255) gtgaatgtggtcggaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTggg > 2:92105‑M1/29‑140 (MQ=255) tgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGgtgt > 1:350254‑M1/25‑140 (MQ=255) gtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTa < 2:32029‑M1/120‑1 (MQ=255) gtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTa < 2:229031‑M1/120‑1 (MQ=255) tcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAc > 2:82378‑M1/20‑140 (MQ=255) tcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAc > 1:876043‑M1/20‑140 (MQ=255) gaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCg > 1:322186‑M1/17‑134 (MQ=255) gaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCg < 2:322186‑M1/118‑1 (MQ=255) agggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTc > 1:591139/2‑140 (MQ=255) agggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTc > 1:884843/2‑140 (MQ=255) | CATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTC > NC_000913/379891‑380153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |