Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	942,763	A→G	E602G (GAA→GGA)	dmsA →	dimethyl sulfoxide reductase subunit A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	942,763	0	A	G	100.0%	187.6 / NA	52	E602G (GAA→GGA)	dmsA	dimethyl sulfoxide reductase subunit A
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (27/25);  total (27/25)

ATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGAAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCAAACCCA  >  NC_000913/942627‑942884                                                                                                                                         |                                                                                                                          aTTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGc                                                                                                                        <  1:283131/140‑1 (MQ=255)   tAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGa                                                                                                                      >  1:472470/1‑140 (MQ=255)           gcTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGaa                                                                                                              >  1:395112/1‑140 (MQ=255)                gAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGTGATTCCTGAACTGcc                                                                                                         <  1:300359/140‑1 (MQ=255)                       aGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGcc                                                                                                         >  1:658092/1‑133 (MQ=255)                       aGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGcc                                                                                                         <  2:658092/133‑1 (MQ=255)                         aCCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGa                                                                                                >  2:677972/1‑140 (MQ=255)                           cATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAag                                                                                              >  1:816730/1‑140 (MQ=255)                           cATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAag                                                                                              >  2:781898/1‑140 (MQ=255)                           cATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAag                                                                                              >  2:684678/1‑140 (MQ=255)                             tCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGcc                                                                                                         <  1:218026/127‑1 (MQ=255)                             tCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGcc                                                                                                         >  2:218026/1‑127 (MQ=255)                             tCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAagag                                                                                            >  1:214539/1‑140 (MQ=255)                             tCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAagag                                                                                            >  1:608069/1‑140 (MQ=255)                             tCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAagag                                                                                            >  2:594133/1‑140 (MQ=255)                              cTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGt                                                                                           >  1:134312/1‑140 (MQ=255)                                    aaTGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCa                                                                                     >  2:296005/1‑140 (MQ=255)                                    aaTGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCa                                                                                     <  1:781898/140‑1 (MQ=255)                                     aTGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCa                                                                                     <  2:219053/139‑1 (MQ=255)                                     aTGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCa                                                                                     >  1:219053/1‑139 (MQ=255)                                        aCCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCa                                                                                 >  2:588630/1‑140 (MQ=255)                                         ccAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAg                                                                                <  2:608069/140‑1 (MQ=255)                                           aGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAggg                                                                              <  1:296005/140‑1 (MQ=255)                                           aGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAggg                                                                              <  2:312844/140‑1 (MQ=255)                                           aGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAggg                                                                              <  1:594133/140‑1 (MQ=255)                                                          cGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAgcg                                                               <  2:816730/140‑1 (MQ=255)                                                          cGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAgcg                                                               <  1:579871/140‑1 (MQ=255)                                                                   gTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCcaca                                                      <  2:134312/140‑1 (MQ=255)                                                                             aGTTTACTGAAGGCTGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCAc                                            <  1:948458/140‑1 (MQ=255)                                                                             aGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCAc                                            <  1:677972/140‑1 (MQ=255)                                                                             aGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCAc                                            <  1:588630/140‑1 (MQ=255)                                                                               tttACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATAACGt                                          >  2:375137/1‑140 (MQ=255)                                                                                ttACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGtt                                         <  1:684678/140‑1 (MQ=255)                                                                                 tACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTg                                        >  1:722660/1‑140 (MQ=255)                                                                                      aaGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTtat                                   >  1:456275/1‑140 (MQ=255)                                                                                           cGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATAACGTTGCTTATAAAGc                              <  1:375137/140‑1 (MQ=255)                                                                                            gTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGcc                             <  2:456275/140‑1 (MQ=255)                                                                                             tACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCATGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGcc                             <  2:753010/139‑1 (MQ=255)                                                                                             tACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCATGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGcc                             >  1:753010/1‑139 (MQ=255)                                                                                                  aGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGtt                                         <  1:260407/122‑1 (MQ=255)                                                                                                  aGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGtt                                         >  2:260407/1‑122 (MQ=255)                                                                                                         gTGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATc                >  2:292720/1‑140 (MQ=255)                                                                                                          tGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATcc               >  2:947085/1‑140 (MQ=255)                                                                                                          tGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATcc               >  2:143218/1‑140 (MQ=255)                                                                                                          tGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATcc               >  1:795702/1‑140 (MQ=255)                                                                                                          tGGATGCGGCATCTGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATcc               >  1:246857/1‑140 (MQ=255)                                                                                                                       tGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCAAACCCa  <  2:472470/140‑1 (MQ=255)                                                                                                                       tGTATGCCCAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCAAACCCa  <  2:395112/140‑1 (MQ=255)                                                                                                                             cccAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCa        >  1:921779/1‑128 (MQ=255)                                                                                                                             cccAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCa        <  2:921779/128‑1 (MQ=255)                                                                                                                              ccAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCa        >  1:938196/1‑127 (MQ=255)                                                                                                                              ccAGTCGCGGGGAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCa        <  2:938196/127‑1 (MQ=255)                                                                                                                                         |                                                                                                                          ATTAAACCGCGCTTTGAATGTAAGACCATCTATGAAATGACCAGCGAACTGGCAAAACGTCTTGGCGTTGAGCAACAGTTTACTGAAGGCCGTACCCAGGAAGAGTGGATGCGGCATCTGTATGCCCAGTCGCGGGAAGCGATTCCTGAACTGCCAACGTTTGAAGAGTTCCGCAAGCAGGGGATCTTTAAAAAGCGCGACCCACAAGGGCATCACGTTGCTTATAAAGCCTTCCGTGAAGATCCGCAGGCAAACCCA  >  NC_000913/942627‑942884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑