Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,288,526	T→C	pseudogene (389/2525 nt)	yejO ←	adhesin‑like autotransporter YejO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,288,526	0	T	C	100.0%	274.3 / NA	78	pseudogene (389/2525 nt)	yejO	adhesin‑like autotransporter YejO
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/35);  total (43/35)

CAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACG‑G‑CCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCG  >  NC_000913/2288390‑2288661                                                                                                                                         |                                                                                                                                          cAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGccct                                                                                                                                        <  2:8238/140‑1 (MQ=255) cAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGccct                                                                                                                                        >  2:626808/1‑140 (MQ=255)   aTACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGccctcc                                                                                                                                      <  1:914714/140‑1 (MQ=255)    tACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTccc                                                                                                                                     >  1:758151/1‑140 (MQ=255)     aCCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGccctccct                                                                                                                                    >  1:85100/1‑140 (MQ=255)       cATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCttt                                                                                                                                  >  1:917713/1‑140 (MQ=255)         ttCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTc                                                                                                                                >  1:103997/1‑140 (MQ=255)           cTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGa                                                                                                                              <  1:626808/140‑1 (MQ=255)            ttGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGAt                                                                                                                             <  2:692848/140‑1 (MQ=255)            ttGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGAt                                                                                                                             >  1:374709/1‑140 (MQ=255)              gATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATa                                                                                                                            <  1:385830/139‑1 (MQ=255)              gATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATa                                                                                                                            >  2:385830/1‑139 (MQ=255)                tatCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCg                                                                                                                         <  2:374709/140‑1 (MQ=255)                tatCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCg                                                                                                                         >  1:18661/1‑140 (MQ=255)                 atCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGa                                                                                                                        >  1:618124/1‑140 (MQ=255)                 atCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGa                                                                                                                        >  1:215517/1‑140 (MQ=255)                   cGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACa                                                                                                                      >  2:581550/1‑140 (MQ=255)                     aaCTGACCGAGACGGTTTGTTCCGAATGCCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCttt                                                                                                                                  <  1:798229/126‑1 (MQ=255)                     aaCTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCttt                                                                                                                                  >  2:798229/1‑126 (MQ=255)                     aaCTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACaaa                                                                                                                    >  2:229680/1‑140 (MQ=255)                          aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACg‑g                                                                                                              >  1:773199/1‑140 (MQ=255)                          aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACg‑g                                                                                                              >  2:562507/1‑140 (MQ=255)                          aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCACCCTCTTTAACCTCCAGTAGACCTCCCTTTTCGATAGCGACAAAGACgc                                                                                                               >  2:69471/1‑139 (MQ=255)                          aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATC‑ACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGAt                                                                                                                             >  1:893310/1‑125 (MQ=255)                          aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATC‑ACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGAt                                                                                                                             <  2:893310/125‑1 (MQ=255)                          aCCGAGACGGTTTGTTCCAAATACCTCCATGGCCCGCGTGGTTTTTTTAATAGCCCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACg‑g                                                                                                              <  2:420978/140‑1 (MQ=255)                           ccGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑c                                                                                                            <  1:229680/140‑1 (MQ=255)                                aCGTTTTGTCCCGAATCCCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccc                                                                                                       <  2:917713/140‑1 (MQ=255)                                aCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccc                                                                                                       <  2:330297/140‑1 (MQ=255)                                  ggTTTGTTCCGAATCCCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                     <  1:733966/140‑2 (MQ=255)                                  ggTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                     <  1:246947/140‑2 (MQ=255)                                    tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑ccccccccat                                                                                                   >  2:78365/1‑137 (MQ=255)                                        ttCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCttt                                                                                                >  1:145704/1‑140 (MQ=255)                                        ttCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                     <  2:28009/134‑2 (MQ=255)                                        ttCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑G‑cccccccc                                                                                                     >  1:28009/1‑133 (MQ=255)                                                        ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAgcgc                                                                                <  2:18661/140‑1 (MQ=255)                                                         gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGcgcc                                                                               <  2:215517/140‑1 (MQ=255)                                                          cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGcgccc                                                                              <  2:758151/140‑1 (MQ=255)                                                            cgcgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGcgcccgc                                                                            >  1:439175/1‑140 (MQ=255)                                                                   ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAAt                                                                     <  2:103997/140‑1 (MQ=255)                                                                     gttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                   <  2:773199/140‑1 (MQ=255)                                                                           aTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTAt                                                             >  2:351064/1‑140 (MQ=255)                                                                               cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAtt                                                         >  1:775143/1‑140 (MQ=255)                                                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc                                                        >  1:54024/1‑140 (MQ=255)                                                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc                                                        >  2:127699/1‑140 (MQ=255)                                                                                aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc                                                        >  1:206992/1‑140 (MQ=255)                                                                                 ccGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                       <  2:618124/140‑1 (MQ=255)                                                                                 ccGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                       >  2:972890/1‑140 (MQ=255)                                                                                    ccttgttttTGATCTACCCCAAAAGCAAAACCCCCCCCTTTAACCCCCAGTAGCCCCCCCTTTTCGAAAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                    <  2:286549/135‑1 (MQ=255)                                                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGTGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                    >  1:575282/1‑140 (MQ=255)                                                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                    <  2:206992/140‑1 (MQ=255)                                                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                    <  2:775143/140‑1 (MQ=255)                                                                                       gCTTTCTGATCTGCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcgc                                                 >  1:177545/1‑140 (MQ=255)                                                                                         tttCTGATCTGCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                               <  2:177545/140‑1 (MQ=255)                                                                                            cTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCCCTGCGCCATaa                                            >  1:286549/1‑140 (MQ=255)                                                                                               aTCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                       <  1:906094/126‑1 (MQ=255)                                                                                               aTCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg                                                       >  2:906094/1‑126 (MQ=255)                                                                                                  tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACGCC‑CCCCCCCATCTTTTTCAACGATTAACCGCCCGCCTTTAATCGTGGTATCTTTCGCTCCGCCATAAACCtct                                      >  2:384990/1‑138 (MQ=255)                                                                                                  tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGt                                      >  1:396311/1‑140 (MQ=255)                                                                                                   aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                    >  2:204953/1‑125 (MQ=255)                                                                                                   aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                    <  1:204953/125‑1 (MQ=255)                                                                                                   aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                            >  2:687970/1‑133 (MQ=255)                                                                                                   aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                            <  1:687970/133‑1 (MQ=255)                                                                                                     cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc                                   >  2:454717/1‑140 (MQ=255)                                                                                                      gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                  <  2:54024/140‑1 (MQ=255)                                                                                                      gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                  <  1:581550/140‑1 (MQ=255)                                                                                                      ccaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                  <  2:770119/139‑1 (MQ=255)                                                                                                      ccaaatgcaaacCCCCCCTCTTTACCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                  <  2:637372/139‑1 (MQ=255)                                                                                                       caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcac                                 <  2:145704/140‑1 (MQ=255)                                                                                                         aatgcaaatCCCCCCTCTTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac                               >  1:534428/1‑140 (MQ=255)                                                                                                                       ctctTTAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                 >  1:159459/1‑140 (MQ=255)                                                                                                                          tttAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTc              <  1:351064/140‑1 (MQ=255)                                                                                                                          tttAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTc              >  2:285612/1‑140 (MQ=255)                                                                                                                            tAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                 >  2:274148/1‑135 (MQ=255)                                                                                                                            tAACCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                 <  1:274148/135‑1 (MQ=255)                                                                                                                             aaCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTgg           >  1:339581/1‑140 (MQ=255)                                                                                                                              aCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTTCGCCATAAACCTGTAGCACACCATTATTGa                      >  2:919565/1‑128 (MQ=255)                                                                                                                              aCCTCCAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGa                      <  1:919565/128‑1 (MQ=255)                                                                                                                                  ccAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                   <  1:119576/127‑1 (MQ=255)                                                                                                                                  ccAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                   >  2:119576/1‑127 (MQ=255)                                                                                                                                  ccAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGc      >  2:860303/1‑140 (MQ=255)                                                                                                                                   cAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc     >  1:430786/1‑140 (MQ=255)                                                                                                                                   cAGTAGCCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc     >  2:462777/1‑140 (MQ=255)                                                                                                                                    agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg    >  2:776197/1‑140 (MQ=255)                                                                                                                                    agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg    >  1:460254/1‑140 (MQ=255)                                                                                                                                    agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg    >  1:615330/1‑140 (MQ=255)                                                                                                                                    agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg    <  1:127699/140‑1 (MQ=255)                                                                                                                                    agtagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg    >  2:338652/1‑140 (MQ=255)                                                                                                                                      tagcCCTCCCTTTTCGATAGCGACAAAGACG‑GCCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgcg  <  2:615330/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                          CAATACCATTCTTGATATCGAACTGACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACG‑G‑CCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCG  >  NC_000913/2288390‑2288661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑