| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,424,506 | A→G | S2P (TCC→CCC) | hisP ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,424,506 | 0 | A | G | 96.7% | 213.8 / 0.2 | 60 | S2P (TCC→CCC) | hisP | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (24/34); minor base C (1/1); total (25/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 | |||||||||||
CCCGATCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAA > NC_000913/2424382‑2424635 | cccGATCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGt < 2:480162/140‑1 (MQ=255) ccGATCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTg < 2:668677/140‑1 (MQ=255) aTCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGt > 2:145382/1‑140 (MQ=255) cgacgaTCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTgaa < 1:175107/140‑1 (MQ=255) cgacgaTCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTgaa < 1:642971/140‑1 (MQ=255) gatgatGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTc < 2:16232/140‑1 (MQ=255) tgatgCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCATCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTcac < 1:148847/140‑1 (MQ=255) gCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACAtgc > 1:135997/1‑140 (MQ=255) cTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACAtgct > 1:114940/1‑140 (MQ=255) cTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACAtgct > 2:409005/1‑140 (MQ=255) cTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACAtgct > 2:491448/1‑140 (MQ=255) ttattaCATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACAtgctg > 1:650806/1‑140 (MQ=255) ctcCGGCCTTCGCTTGCAGTGATGCCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCg < 1:56774/140‑1 (MQ=255) ctcCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGTCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCTCATGCTGCAAGCAGCg > 2:56774/1‑140 (MQ=255) ctcCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCg > 1:515279/1‑140 (MQ=255) ctcCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCg > 2:672393/1‑140 (MQ=255) ctcCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCg > 1:231204/1‑140 (MQ=255) ctcCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCg < 2:757589/140‑1 (MQ=255) tcCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGt > 2:639652/1‑140 (MQ=255) cGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGttt > 1:211676/1‑140 (MQ=255) cGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGttt > 2:777387/1‑140 (MQ=255) tGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAag < 1:153488/140‑1 (MQ=255) aTACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAagag > 2:666965/1‑140 (MQ=255) aTACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAagag > 1:29419/1‑140 (MQ=255) tACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAgg < 1:639652/140‑1 (MQ=255) tACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAgg < 1:826814/140‑1 (MQ=255) tACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAgg < 2:231204/140‑1 (MQ=255) tACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAgg < 1:555112/140‑1 (MQ=255) cccTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTg > 1:421024/1‑140 (MQ=255) ccTTTCAGCACTTCATGTTCGCTGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGa < 1:446238/140‑1 (MQ=255) cTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGAt < 2:319154/140‑1 (MQ=255) cTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGAt > 1:778875/1‑140 (MQ=255) cTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGAt < 2:135997/140‑1 (MQ=255) cTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGAt < 1:672393/140‑1 (MQ=255) ttCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCa < 1:390203/140‑1 (MQ=255) ttCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCa > 1:43565/1‑140 (MQ=255) ttCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCa > 1:484260/1‑140 (MQ=255) ttCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCa > 2:607200/1‑140 (MQ=255) ttCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCa > 2:363808/1‑140 (MQ=255) tCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAg < 2:825695/140‑1 (MQ=255) tCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAg < 2:114940/140‑1 (MQ=255) tCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAg < 1:607200/140‑1 (MQ=255) cAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAgg < 1:363808/140‑1 (MQ=255) cACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACa < 1:523766/140‑1 (MQ=255) cATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAaga > 1:700951/1‑140 (MQ=255) cATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGCCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAaga > 2:236406/1‑140 (MQ=255) tGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAgaga < 2:484260/140‑1 (MQ=255) tGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAgaga < 2:515279/140‑1 (MQ=255) tGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAgaga < 1:491448/140‑1 (MQ=255) tCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAgatga > 2:149051/1‑140 (MQ=255) tCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAgatga < 2:211676/140‑1 (MQ=255) gCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGAtt < 2:29419/140‑1 (MQ=255) gCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGAtt < 1:734048/140‑1 (MQ=255) ccGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTa > 2:557283/1‑140 (MQ=255) aGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATa < 1:777387/140‑1 (MQ=255) gTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATagag < 2:778875/140‑1 (MQ=255) gTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATagag < 2:421024/140‑1 (MQ=255) aTCGATAACGTTTAATTTATTCTCGGCCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCa < 1:236406/140‑1 (MQ=255) tAACGTTTAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGcc > 1:290237/1‑140 (MQ=255) tttAATTTATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAgg < 1:555107/140‑1 (MQ=255) ttATTCTCGGGCATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTaa < 2:650806/140‑1 (MQ=255) | CCCGATCCCGACGATCCGATGATGCTTATTACATCTCCGGCATTCGCTTGCAGTGATACCCCTTTCAGCACTTCATGTTCGCCGTAGCGTTTGTGCAAATCGATAACGTTTAATTTATTCTCGGACATCGTATTCTCAGTGCGTTGAAGAAGGTTTCACATGCTGCAACCAGCGTTTTTCCGCTCTGCGAAAGAGGCTGATCAGGACATAAGAGATGATTAAATAGAGCACCGCGGCAATGCCGAAGGCGGTAA > NC_000913/2424382‑2424635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |