mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,911,754 | 0 | T | G | 53.3% | 8.7 / 17.6 | 15 | T275P (ACC→CCC) | htpX | zinc dependent endoprotease |
| * | NC_000913 | 60,505 | 0 | A | G | 51.0% | 1.9 / 70.3 | 51 | R920R (CGT→CGC) | rapA | RNA polymerase‑binding ATPase and RNAP recycling factor |
| * | NC_000913 | 4,604,344 | 0 | C | T | 48.8% | 18.7 / 32.1 | 41 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,545,256 | 0 | T | C | 40.6% | 14.2 / 33.0 | 32 | L54S (TTA→TCA) | fimD | type I fimbriae usher protein |
| * | NC_000913 | 3,401,459 | 0 | T | C | 40.0% | 31.8 / 11.3 | 30 | D625G (GAT→GGT) | csrD | regulator of CsrB and CsrC decay |
| * | NC_000913 | 3,556,205 | 0 | A | C | 38.7% | 39.0 / 13.4 | 31 | S215R (AGT→AGG) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 29,496 | 0 | T | A | 35.5% | 52.1 / 13.8 | 31 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 646,747 | 0 | T | G | 30.3% | 53.3 / 15.5 | 33 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.3% | 78.7 / 28.3 | 44 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,477,902 | 0 | T | C | 21.5% | 123.3 / 34.1 | 65 | V19A (GTA→GCA) | dsdX | D‑serine transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 48 (0.980) | 8 (0.170) | 8/258 | 2.9 | 15.6% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 42 (0.920) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 40 (0.820) | 6 (0.130) | 6/258 | 3.5 | 13.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 42 (0.920) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2052058 | 49 (1.000) | 3 (0.080) +34 bp |
3/208 | 4.0 | 7.4% | intergenic (+44/+218) | yeeJ/yeeL | inverse autotransporter adhesin/putative glycosyltransferase, N‑terminal fragment |
| ? | NC_000913 | = 2058107 | 50 (1.020) | intergenic (‑5/+96) | asnW/yeeO | tRNA‑Asn/FMN/FAD exporter | |||||
| * | ? | NC_000913 | 3787895 = | 37 (0.750) | 4 (0.090) | 4/256 | 4.2 | 10.5% | coding (1058/1260 nt) | envC | murein hydrolase activator EnvC |
| ? | NC_000913 | = 3787891 | 34 (0.750) | coding (1054/1260 nt) | envC | murein hydrolase activator EnvC | |||||
| * | ? | NC_000913 | 2842452 = | NA (NA) | 3 (0.080) +28 bp |
3/220 | 4.2 | NA | noncoding (29/34 nt) | other | REP197a |
| ? | NC_000913 | = 3392168 | NA (NA) | intergenic (‑140/+290) | tldD/yhdP | metalloprotease TldD/AsmA2 domain‑containing protein | |||||