| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,185,875 | (G)7→8 | intergenic (‑79/‑42) | rcnR ← / → rcnA | DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,185,868 | 1 | . | G | 96.4% | 90.3 / ‑3.2 | 28 | intergenic (‑72/‑49) | rcnR/rcnA | DNA‑binding transcriptional repressor RcnR/Ni(2(+))/Co(2(+)) exporter |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (19/8); total (19/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCC > NC_000913/2185730‑2186001 | cGACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑g > 1:84328/1‑140 (MQ=255) ccTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑gggg < 2:552989/140‑1 (MQ=255) cTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑ggggg < 2:23936/140‑1 (MQ=255) tGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑gggggg < 1:734966/140‑1 (MQ=255) aaTCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGa > 1:385155/1‑140 (MQ=255) tACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAg > 1:477165/1‑140 (MQ=255) gCACGCGCTTTAAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGc > 1:686550/1‑140 (MQ=255) aCGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCg > 1:623405/1‑140 (MQ=255) cgcTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAAt > 1:390018/1‑140 (MQ=255) aggTATGAGACATGGTAACTCCTGGTTAACAAGAATATGAAAAATAATAGCGCTATTAATGTACTGGGGAGTGGTATCAGGTAATG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAcc < 2:543832/138‑1 (MQ=255) gaCATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAcc < 2:424685/132‑1 (MQ=255) gaCATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAcc > 1:424685/1‑132 (MQ=255) cATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACaa < 2:390018/140‑1 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAcc > 1:195737/1‑129 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGAcc < 2:195737/129‑1 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGa < 2:147842/131‑1 (MQ=255) aTGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGa > 1:147842/1‑131 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc > 2:88052/1‑140 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAActc > 1:431862/1‑140 (MQ=255) ggCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAAcct > 1:543832/1‑138 (MQ=255) cTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCa > 1:504718/1‑140 (MQ=255) tGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGc < 2:623405/140‑1 (MQ=255) ggTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCa < 2:385155/140‑1 (MQ=255) aCAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGaa > 1:144937/1‑140 (MQ=255) aaGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAAc > 1:215889/1‑140 (MQ=255) tatGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTg > 1:620077/1‑140 (MQ=255) tatGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTgg < 2:84328/140‑1 (MQ=255) tggAAAAATATTAGCATTATTAATCTCCTGGGGGTTGGTATCAGTTACT‑‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGt < 2:810251/138‑1 (MQ=255) cTATTAATCTACTGGGGGGTAGTATCAGGTGCTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAgcg < 1:88052/140‑1 (MQ=255) ttAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATccc > 1:133419/1‑132 (MQ=255) ttAATCTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATccc < 2:133419/132‑1 (MQ=255) cTACTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCtct > 1:231355/1‑138 (MQ=255) cTGGGGGGTAGTATCAGGTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACtt > 1:258675/1‑140 (MQ=255) ggcagtaTCAGGAACTG‑GGGGGGGAGAAGAATCGGAGTGCCGAAGTAAGACTAAGAATTATTATCATGACCGAATTTAAAACTCTTCTTCAGCAAGGAAGCGGCTGGGTCTGCATCCCCAGCGCCATCTTACTTGGTgcc > 2:491867/4‑139 (MQ=255) ggTACTG‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGcc > 2:776445/1‑140 (MQ=255) | CGACCTGGCCCTGAATCTTACTGGCACGCGCTTTCAGTTTCTGTTTATCACGGATTGTATGAGACATGGCAACACCTGGTTAACAAGAATATGAAAAATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACT‑‑GGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCATGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCC > NC_000913/2185730‑2186001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |