Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,338,117	(A)8→7	intergenic (‑188/+137)	adiY ← / ← adiA	DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,338,110	0	A	.	100.0%	373.8 / NA	88	intergenic (‑181/+144)	adiY/adiA	DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (48/40);  total (48/40)

AAGCAAAGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCG  >  NC_000913/4337971‑4338244                                                                                                                                            |                                                                                                                                       aagcaaagcGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCa                                                                                                                                        >  1:1640190/1‑140 (MQ=255)  agcaaagcGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAAAAGTACAAAGTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGTTAAGTAACAGGCaa                                                                                                                                       >  2:1468338/1‑140 (MQ=255)     aaagcGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaa                                                                                                                                    >  2:1198354/1‑140 (MQ=255)       agcGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaa                                                                                                                                  >  1:690817/1‑140 (MQ=255)        gcGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaag                                                                                                                                 >  1:1345050/1‑139 (MQ=255)         cGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaagc                                                                                                                                <  1:366024/140‑3 (MQ=255)          gATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaagcg                                                                                                                               <  2:924213/140‑4 (MQ=255)          gATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaagcg                                                                                                                               <  2:1303607/140‑4 (MQ=255)          gATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaagcg                                                                                                                               <  2:1368342/140‑4 (MQ=255)          gATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaagcg                                                                                                                               <  1:344924/140‑4 (MQ=255)          gATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCaaaaaaagcg                                                                                                                               <  2:690817/140‑4 (MQ=255)                   aaaTGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTggg                                                                                                                     >  2:1377211/1‑140 (MQ=255)                         ttATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCcgcg                                                                                                               >  2:651905/1‑140 (MQ=255)                          tatataATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCgcgc                                                                                                              >  1:1425193/1‑140 (MQ=255)                            tataATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACT‑ATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCaaa                                                                                                           <  1:501530/140‑1 (MQ=255)                                 ttGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGt                                                                                                       >  1:985985/1‑140 (MQ=255)                                  tGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTa                                                                                                      <  2:539632/140‑1 (MQ=255)                                   gTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTAt                                                                                                     >  2:37833/1‑140 (MQ=255)                                    tATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATg                                                                                                    >  2:917462/1‑140 (MQ=255)                                    tATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATg                                                                                                    <  1:1517183/140‑1 (MQ=255)                                      tgatgaATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGAc                                                                                                  >  2:56460/1‑140 (MQ=255)                                      tgatgaATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGAc                                                                                                  >  1:1449544/1‑140 (MQ=255)                                      tgatgaATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGAc                                                                                                  >  2:1426130/1‑140 (MQ=255)                                      tgatgaATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGAc                                                                                                  >  1:570618/1‑140 (MQ=255)                                         tgaATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACAtt                                                                                               >  1:288288/1‑140 (MQ=255)                                           aaTATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACAtttt                                                                                             >  2:755514/1‑140 (MQ=255)                                                     tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagc                                                                                   >  1:1255990/1‑140 (MQ=255)                                                     tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagc                                                                                   >  2:615844/1‑140 (MQ=255)                                                     tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagc                                                                                   >  2:204553/1‑140 (MQ=255)                                                     tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagc                                                                                   >  2:28669/1‑140 (MQ=255)                                                     tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagc                                                                                   >  2:534301/1‑140 (MQ=255)                                                     tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagc                                                                                   >  2:542803/1‑140 (MQ=255)                                                     tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagc                                                                                   >  2:560735/1‑140 (MQ=255)                                                      gCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagca                                                                                  >  1:1116829/1‑140 (MQ=255)                                                      gCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcagca                                                                                  >  1:291988/1‑140 (MQ=255)                                                       cATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCaa                                                                                 >  1:77489/1‑140 (MQ=255)                                                       cATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCaa                                                                                 >  2:1596068/1‑140 (MQ=255)                                                       cATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCaa                                                                                 >  1:490458/1‑140 (MQ=255)                                                       cATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCaa                                                                                 >  2:566400/1‑140 (MQ=255)                                                       cATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCaa                                                                                 >  1:264914/1‑140 (MQ=255)                                                       cATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGAAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGTCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCaa                                                                                 >  2:993611/1‑140 (MQ=255)                                                        aTAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAAt                                                                                >  2:807307/1‑140 (MQ=255)                                                         tAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAAtt                                                                               <  1:817231/140‑1 (MQ=255)                                                         tAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAAtt                                                                               <  1:713776/140‑1 (MQ=255)                                                                 aCGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGaa                                                                       >  2:275047/1‑140 (MQ=255)                                                                 aCGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGaa                                                                       <  2:1488106/140‑1 (MQ=255)                                                                   gAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGaaaa                                                                     <  1:153777/140‑1 (MQ=255)                                                                        ttACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTg                                                                <  2:1255990/140‑1 (MQ=255)                                                                        ttACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTg                                                                <  2:264914/140‑1 (MQ=255)                                                                          aCTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGcc                                                              <  1:486403/140‑1 (MQ=255)                                                                                aGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTc                                                        >  2:223323/1‑140 (MQ=255)                                                                                  tACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTg                                                                <  2:1067548/130‑1 (MQ=255)                                                                                  tACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTg                                                                >  2:1262880/1‑130 (MQ=255)                                                                                  tACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTg                                                                <  1:1262880/130‑1 (MQ=255)                                                                                  tACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTg                                                                >  1:1067548/1‑130 (MQ=255)                                                                                  tACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaa                                                      >  2:855425/1‑140 (MQ=255)                                                                                   aCAAATTTTTATAGTATTTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaaa                                                     <  2:668009/140‑1 (MQ=255)                                                                                   aCAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaaa                                                     >  1:288965/1‑140 (MQ=255)                                                                                   aCAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaaa                                                     <  1:755514/140‑1 (MQ=255)                                                                                   aCAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaaa                                                     <  2:1449544/140‑1 (MQ=255)                                                                                   aCAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaaa                                                     <  1:542803/140‑1 (MQ=255)                                                                                    cAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaaaa                                                    <  2:1425193/140‑1 (MQ=255)                                                                                    cAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCaaaa                                                    >  2:222866/1‑140 (MQ=255)                                                                                     aaaTTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAg                                                   >  2:682560/1‑140 (MQ=255)                                                                                        tttttATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGcc                                                <  1:37833/140‑1 (MQ=255)                                                                                         ttttATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCt                                               <  2:77489/140‑1 (MQ=255)                                                                                          tttATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTa                                              >  2:1025362/1‑140 (MQ=255)                                                                                            tataGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAg                                            >  2:32919/1‑140 (MQ=255)                                                                                                  aaTTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGTCCAgg                                      <  1:560735/140‑1 (MQ=255)                                                                                                  aaTTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAgg                                      <  1:575737/140‑1 (MQ=255)                                                                                                  aaTTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAgg                                      <  2:490458/140‑1 (MQ=255)                                                                                                  aaTTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCAGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAgg                                      <  1:56460/140‑1 (MQ=255)                                                                                                    tttCTCATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcg                                    <  1:651905/140‑1 (MQ=255)                                                                                                       ctcATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGgcggcg                                 <  1:566400/140‑1 (MQ=255)                                                                                                       ctcATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGgcggcg                                 <  2:947680/140‑1 (MQ=255)                                                                                                       ctcATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGgcggcg                                 <  1:615844/140‑1 (MQ=255)                                                                                                       ctcATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGgcggcg                                 <  2:1326736/140‑1 (MQ=255)                                                                                                         cATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAgg                                      >  2:733191/1‑133 (MQ=255)                                                                                                         cATGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAgg                                      <  1:733191/133‑1 (MQ=255)                                                                                                          aTGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTaa                              >  1:107147/1‑140 (MQ=255)                                                                                                           tGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt                             <  1:972976/140‑1 (MQ=255)                                                                                                           tGTACATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt                             <  1:28669/140‑1 (MQ=255)                                                                                                               cATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa                         >  2:721502/1‑140 (MQ=255)                                                                                                               cATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa                         >  1:1587469/1‑140 (MQ=255)                                                                                                               cATATTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGCTa                         >  2:1465376/1‑140 (MQ=255)                                                                                                                  atTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGgcggcg                                 <  1:1016904/129‑1 (MQ=255)                                                                                                                  atTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGgcggcg                                 >  2:1016904/1‑129 (MQ=255)                                                                                                                  atTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt                             >  1:985283/1‑133 (MQ=255)                                                                                                                  atTTTTTTACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt                             <  2:985283/133‑1 (MQ=255)                                                                                                                   tttttttACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTa                     <  1:1468338/140‑1 (MQ=255)                                                                                                                       tttACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt                             <  1:452087/128‑1 (MQ=255)                                                                                                                       tttACAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAAt                             >  2:452087/1‑128 (MQ=255)                                                                                                                          aCAGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAAtt              <  2:1116829/140‑1 (MQ=255)                                                                                                                            aGGATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTAc            >  1:970015/1‑140 (MQ=255)                                                                                                                              gATAAATAACAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGc          >  2:40637/1‑140 (MQ=255)                                                                                                                                 aaataaCAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCtt       <  2:1362616/140‑1 (MQ=255)                                                                                                                                 aaataaCAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCtt       <  2:1345050/140‑1 (MQ=255)                                                                                                                                    taaCAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAg    <  2:291988/140‑1 (MQ=255)                                                                                                                                      aCAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCg  <  1:32919/140‑1 (MQ=255)                                                                                                                                      aCAGGC‑AAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCg  >  1:748410/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                       AAGCAAAGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCG  >  NC_000913/4337971‑4338244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑