BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542682 =	90 (0.900)	19 (0.200)	18/258	2.7	15.4%	intergenic (+49/‑433)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
*	?	NC_000913	4542996 =	125 (1.340)	19 (0.200)	18/258	2.7	15.4%	intergenic (+363/‑119)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
Rejected: Frequency below/above cutoff threshold.

Only 100 of 159 total aligned reads displayed.

CTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGC  >  NC_000913/4542869‑4543134

gtgatgtgaaattaatttacaatagaaataatttacatatcaaacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCa                                                                                                                                     >  1:201698‑M2/133‑140 (MQ=255)

ctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt                                                                                                                                >  1:611503/1‑140 (MQ=255)

     cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt                                                                                                                                >  1:1088619/1‑135 (MQ=255)

     cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt                                                                                                                                <  2:1088619/135‑1 (MQ=255)

     cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgggg                                                                                                                           <  2:522384/140‑1 (MQ=255)

     cAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgggg                                                                                                                           <  1:618752/140‑1 (MQ=255)

        aaaCCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt                                                                                                                                >  2:1353341/1‑132 (MQ=255)

               tttacaatagaaataatttacatatcaaacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaaa                                                                                                                      <  2:708999‑M2/23‑1 (MQ=255)

                 cATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa                                                                                                               <  2:1207318/140‑1 (MQ=255)

                   caatagaaataatttacatatcaaacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt                                                                                                                  <  1:740049‑M2/27‑1 (MQ=255)

                    aatagaaataatttacatatcaaacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                                 >  1:376241‑M2/113‑140 (MQ=255)

                        tataAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg                                                                                                              <  2:461872/134‑1 (MQ=255)

                         ataAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc                                                                                                       <  1:567473/140‑1 (MQ=255)

                          taAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCCTGTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt                                                                                                           <  2:921917/140‑1 (MQ=255)

                             aCATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc                                                                                                   >  2:647914/1‑140 (MQ=255)

                              cATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa                                                                                                  <  2:378176/140‑1 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGACAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  2:104252/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa                                                                                                               >  2:1112450/1‑123 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa                                                                                                               <  1:1112450/123‑1 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                         <  1:1040822/129‑1 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                         >  2:1040822/1‑129 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc                                                                                                       >  2:148395/1‑131 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGc                                                                                                       <  1:148395/131‑1 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa                                                                                                <  1:1247779/138‑1 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa                                                                                                >  2:1247779/1‑138 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  1:1569363/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  2:1249318/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  1:833529/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  2:348098/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  1:1234167/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  2:596197/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  1:618515/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  2:606665/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  2:652246/1‑140 (MQ=255)

                                  tataAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt                                                                                              >  2:6968/1‑140 (MQ=255)

                                    taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg                                                                                            >  1:492238/1‑140 (MQ=255)

                                    taaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg                                                                                            >  2:495809/1‑140 (MQ=255)

                                        taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg                                                                                                         >  1:17376/1‑123 (MQ=255)

                                         aaacagttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg                                                                                            >  2:1545794‑M2/92‑140 (MQ=255)

                                         aaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac                                                                                       >  2:833631/1‑140 (MQ=255)

                                         aaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac                                                                                       <  2:126008/140‑1 (MQ=255)

                                           aGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa                                                                                     >  2:61471/1‑140 (MQ=255)

                                               aaCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                                 <  2:611503/140‑1 (MQ=255)

                                               aaCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                                 <  1:611100/140‑1 (MQ=255)

                                               aaCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                                 <  2:833529/140‑1 (MQ=255)

                                               aaCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                                 <  1:1249318/140‑1 (MQ=255)

                                               aaCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca                                                                                 >  1:1040813/1‑140 (MQ=255)

                                                aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa                                                                                >  1:1672205/1‑140 (MQ=255)

                                                aCAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCCTTTacaaaacaa                                                                                <  2:1613507/140‑1 (MQ=255)

                                                 cAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaaa                                                                               <  1:1362069/140‑1 (MQ=255)

                                                      gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCTCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa                                                                          <  2:1449565/140‑1 (MQ=255)

                                                       aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa                                                                                <  1:1338486/133‑1 (MQ=255)

                                                       aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa                                                                                >  2:1338486/1‑133 (MQ=255)

                                                       aaTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAc                                                                         <  1:447920/140‑1 (MQ=255)

                                                         tttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg                                                                            <  2:426581‑M2/65‑1 (MQ=255)

                                                         tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca                                                                                      <  2:1196701/125‑1 (MQ=255)

                                                         tatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca                                                                                      >  1:1196701/1‑125 (MQ=255)

                                                          atTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa                                                                      <  1:938008/140‑1 (MQ=255)

                                                           ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGaa                                                                     >  2:249083/1‑140 (MQ=255)

                                                            tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg                                                                       >  1:818143/1‑137 (MQ=255)

                                                            tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAc                                                                    >  1:389730/1‑140 (MQ=255)

                                                            tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAc                                                                    >  2:741001/1‑140 (MQ=255)

                                                              aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                                                                  <  1:833631/140‑1 (MQ=255)

                                                              aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                                                                  >  1:464542/1‑140 (MQ=255)

                                                              aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                                                                  >  2:299441/1‑140 (MQ=255)

                                                              aGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGACAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGa                                                                  >  2:1617666/1‑140 (MQ=255)

                                                                 caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTg                                                               >  1:1475946/1‑140 (MQ=255)

                                                                   acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc                                                             >  2:427252/1‑140 (MQ=255)

                                                                    caaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGccc                                                            >  1:800686/1‑140 (MQ=255)

                                                                        tatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc                                                             <  1:1114562‑M2/80‑1 (MQ=255)

                                                                        tAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGt                                                        <  1:450580/140‑1 (MQ=255)

                                                                             tGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGAtt                                                   >  2:1097199/1‑140 (MQ=255)

                                                                               aaaaaGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTa                                                 >  2:1668322/1‑140 (MQ=255)

                                                                               aaaaaGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTa                                                 >  2:1652999/1‑140 (MQ=255)

                                                                                  aaGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaa                                              <  2:800686/140‑1 (MQ=255)

                                                                                  aaGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaa                                              <  1:6968/140‑1 (MQ=255)

                                                                                      ttGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAg                                          >  2:1417613/1‑140 (MQ=255)

                                                                                       tGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGt                                         <  1:1097199/140‑1 (MQ=255)

                                                                                       tGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGt                                         <  1:1417613/140‑1 (MQ=255)

                                                                                            gcgATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATGGtttttt                                    <  1:427252/140‑1 (MQ=255)

                                                                                              gATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTga                                  >  2:7649/1‑140 (MQ=255)

                                                                                               aTGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaa                                 <  2:460323/140‑1 (MQ=255)

                                                                                                  taacttatttatgatatggacggtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTg                                   >  2:1204155‑M2/35‑140 (MQ=255)

                                                                                                   tttCA‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCTTCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACCCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGCCGATTTAGAAATAGCTTTTTgaaagga                             >  2:318281/1‑140 (MQ=255)

                                                                                                   aacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTga                                  <  2:201698‑M2/107‑1 (MQ=255)

                                                                                                      cc‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                          <  2:1672205/140‑1 (MQ=255)

                                                                                                      cc‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                          <  1:299441/140‑1 (MQ=255)

                                                                                                      cc‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                          <  2:114644/140‑1 (MQ=255)

                                                                                                                tatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAgcagca                     >  1:344064‑M2/21‑140 (MQ=255)

                                                                                                                   ggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGa                  <  2:344064‑M2/123‑1 (MQ=255)

                                                                                                                   aGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaaggaaag                          <  1:1459089/132‑1 (MQ=255)

                                                                                                                      cAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaaa               >  2:1541841/1‑140 (MQ=255)

                                                                                                                          aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAGTTTaa           <  2:181440/140‑1 (MQ=255)

                                                                                                                              ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAAct       <  2:493571‑M2/134‑1 (MQ=255)

                                                                                                                               cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActc      >  1:662513‑M2/6‑140 (MQ=255)

                                                                                                                               cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActc      >  1:1358678‑M2/6‑140 (MQ=255)

                                                                                                                                  aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTgg   <  1:1261505‑M2/138‑1 (MQ=255)

                                                                                                                                   aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGc  >  1:1431017‑M2/2‑140 (MQ=255)

                                                                                                                                   aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGc  <  1:1586377‑M2/139‑1 (MQ=255)

                                                                                                                                   aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGc  <  2:662513‑M2/139‑1 (MQ=255)

CTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCC‑‑‑‑‑TCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGC  >  NC_000913/4542869‑4543134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.