Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,556,205 | 0 | A | C | 31.1% | 82.1 / 13.7 | 45 | S215R (AGT→AGG) ‡ | rtcA | RNA 3'‑terminal phosphate cyclase |
Reads supporting (aligned to +/- strand): ref base A (30/1); new base C (0/14); total (30/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.99e-11 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCC > NC_000913/3556076‑3556343 | aCTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCa > 1:1028370/1‑140 (MQ=255) cTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAg > 2:1644154/1‑140 (MQ=255) aCGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAgtgt > 1:583453/1‑140 (MQ=255) aCGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAgtgt > 2:1360835/1‑140 (MQ=255) cACGGACGACAAAAAAGCGTTGGGTGATTTTTTCACTTGCGACTTAAGGCGGGACGTTATCCCCCGGCCCTTGGGCGCGCGGCAGGTTATAAATTTTCTGTTCA‑GGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCa < 2:1028370/140‑1 (MQ=255) acAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGc > 2:401286/1‑140 (MQ=255) tattttttCTCTTCCGACTTAAAGCGAGACGGTTTTCCCCGGCCCCTGGTCGCGGGGCAGTTTATAAATATTCTGTTCA‑GGAAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCacac < 2:444684/136‑1 (MQ=255) ttttttCACTTTCCACTAGAAGCGAGCCGTTATTCCCCGGCCCTTGGCCGCGGGGCAGTTTATGAATTTTCTGTTCA‑GGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCa < 2:1590235/138‑1 (MQ=255) aCTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATa > 1:287263/1‑140 (MQ=255) aCTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATa > 1:581412/1‑140 (MQ=255) aCTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATa > 1:454375/1‑140 (MQ=255) aCTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATa > 1:317850/1‑140 (MQ=255) tttCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGa > 1:399038/1‑140 (MQ=255) tttCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGa > 2:74613/1‑140 (MQ=255) ttCCACTTCAAGCGAGACGTTATTCCCCGGCCGCTGGTCGCGGGGAAGGTTAAGAATTTTCT‑TTCAGTGCAGAAAAAACCCCGCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGaa < 2:563516/140‑1 (MQ=255) tCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAAc > 1:180817/1‑140 (MQ=255) aCTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTtc > 1:972043/1‑140 (MQ=255) cAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCCCCa < 1:1360835/140‑1 (MQ=255) aGCGAGCCGTTATTCCCCGCCCCCTGGTCGCGCGGCAGTTTATAAATTTTCTGTTCA‑TGAAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACg < 2:399038/140‑1 (MQ=255) gCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGc > 1:1186683/1‑140 (MQ=255) gttATTCCCCGGCCCCTGGTCGCGCGGCAGTTTATAAATATTCTGTTAA‑TGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGca < 1:401286/138‑1 (MQ=255) ggTATTCCCCGGCCCCTGGTCGCGCGGCAGTTTATAAATTTTCTGTTCA‑TGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGca < 2:227273/140‑1 (MQ=255) acagttccccGCCCCCTGGCCGCGGGGCAGTTTATAAATATTTTGTTCA‑TGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGca < 2:155437/133‑1 (MQ=255) tcccccGGCCCCTGGTCGCGGGGCAGGTTATAAATTTTCTGTTCA‑GGAAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAAt < 2:1319872/137‑1 (MQ=255) cccGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGtt > 2:1284536/1‑140 (MQ=255) cgcccccTGGTCGCGCGGCAGTTTATAAATTTTCTGTTCA‑TGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTcc < 2:239776/137‑1 (MQ=255) ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc > 1:1427759/1‑140 (MQ=255) ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc > 2:966952/1‑140 (MQ=255) ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc > 2:1311968/1‑140 (MQ=255) cccTGGCCGCGCGGCAGTTTATAAATTTTTTGTTCA‑GGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgcg < 2:583453/140‑1 (MQ=255) cTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgctgt > 1:155437/1‑137 (MQ=255) tGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTc > 1:1623127/1‑140 (MQ=255) gTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGc > 2:606913/1‑140 (MQ=255) tCGGGCGGCAGTTTATGAATTTCTTGTACA‑GGGAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGcc < 1:1644154/140‑1 (MQ=255) cgcgGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAg > 1:813852/1‑140 (MQ=255) cgGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGtt > 1:1205017/1‑140 (MQ=255) gagtttATAAATATTCTGTTCA‑GGGAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa < 1:219065/136‑1 (MQ=255) ggtttATAAATTTTCTGCTCA‑TGGAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCaa < 1:476375/137‑1 (MQ=255) aGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCaa > 2:1008782/1‑140 (MQ=255) tATGAATTTTCTGTTCA‑TGCAGGGAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGgtg < 1:543150/140‑1 (MQ=255) aTGAATTTTCTGTTCA‑GGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGgtgt < 2:1205017/140‑1 (MQ=255) ttCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGa > 1:913217/1‑140 (MQ=255) ttCTGTTCA‑TGCAGGGAAAAACTCCCCACCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGa > 2:393618/1‑140 (MQ=255) tCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt > 2:1585509/1‑140 (MQ=255) ttCA‑TGAAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa < 2:972043/140‑1 (MQ=255) tCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAGGGTGTTAAACGATGCCAc > 2:1543317/1‑140 (MQ=255) cA‑TGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACg < 2:581412/140‑1 (MQ=255) tGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACggg > 1:789832/1‑140 (MQ=255) gggAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCgag > 2:1164771/1‑140 (MQ=255) aaCTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTcc > 2:438537/1‑140 (MQ=255) | ACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCA‑TGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCC > NC_000913/3556076‑3556343 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |