BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,518,866	T→C	I67V (ATC→GTC)	aroK ←	shikimate kinase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,518,866	0	T	C	100.0%	458.0 / NA	125	I67V (ATC→GTC)	aroK	shikimate kinase 1
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (64/61); total (64/61)

Only 100 of 126 total aligned reads displayed.

TGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGATGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTG  >  NC_000913/3518729‑3518998

tgcAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATtgacga                                                                                                                                    >  2:1381064/1‑140 (MQ=255)

tgcAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGA‑‑‑GCCGCCAGTAGTCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCt                                                                                                                                 >  1:1566429/1‑140 (MQ=255)

  cAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGAcc                                                                                                                                  >  2:1583117/1‑140 (MQ=255)

  cAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGAcc                                                                                                                                  >  2:317540/1‑140 (MQ=255)

    aGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCtt                                                                                                                                >  2:747858/1‑140 (MQ=255)

       tGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTttc                                                                                                                             >  2:1443999/1‑140 (MQ=255)

         cTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTttctt                                                                                                                           >  2:888263/1‑140 (MQ=255)

         cTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTttctt                                                                                                                           >  2:1294844/1‑140 (MQ=255)

                   gTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGTCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATcgcg                                                                                                                 <  1:1583117/140‑1 (MQ=255)

                   gTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATcgcg                                                                                                                 >  1:79478/1‑140 (MQ=255)

                      gTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGaa                                                                                                              <  1:685643/140‑1 (MQ=255)

                              aTAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGCCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCcttctt                                                                                                      >  2:1274053/1‑140 (MQ=255)

                                aaaCGACAACGCCACGAGCGGAAAGACGGTTATGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCg                                                                                                    <  1:1443999/140‑1 (MQ=255)

                                  aCGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATcg                                                                                                                   >  1:1331928/1‑123 (MQ=255)

                                  aCGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATcg                                                                                                                   <  2:1331928/123‑1 (MQ=255)

                                  aCGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGcc                                                                                                  >  2:1325855/1‑140 (MQ=255)

                                  aCGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGcc                                                                                                  >  2:552529/1‑140 (MQ=255)

                                     aCAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGc                                                                                                   >  2:1475146/1‑136 (MQ=255)

                                         cGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAg                                                                                                             <  2:171587/122‑1 (MQ=255)

                                         cGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAg                                                                                                             >  1:269356/1‑122 (MQ=255)

                                         cGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAg                                                                                                             <  2:269356/122‑1 (MQ=255)

                                           ccACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATc                                                                                         >  1:1058069/1‑140 (MQ=255)

                                             aCGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGa                                                                                       <  2:624471/140‑1 (MQ=255)

                                               gAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGaaa                                                                                     <  2:79478/140‑1 (MQ=255)

                                                aGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGaaaa                                                                                    >  1:359624/1‑140 (MQ=255)

                                                  cGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAAcc                                                                                  <  1:1325855/140‑1 (MQ=255)

                                                  cGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAAcc                                                                                  <  1:1536533/140‑1 (MQ=255)

                                                  cGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAAcc                                                                                  <  1:1381064/140‑1 (MQ=255)

                                                    gAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAAcc                                                                                  >  2:1018077/1‑138 (MQ=255)

                                                    gAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAAcc                                                                                  <  1:1018077/138‑1 (MQ=255)

                                                       aGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGcc                                                                             <  2:359624/140‑1 (MQ=255)

                                                       aGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGcc                                                                             <  2:815310/140‑1 (MQ=255)

                                                        gACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGccc                                                                            <  1:757733/140‑1 (MQ=255)

                                                           ggTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCcaca                                                                         >  1:836245/1‑140 (MQ=255)

                                                            gTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACAt                                                                        >  1:281490/1‑140 (MQ=255)

                                                             ttACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATc                                                                       >  1:1387122/1‑140 (MQ=255)

                                                               aCGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAg                                                                     >  2:265549/1‑140 (MQ=255)

                                                                cgcgTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGc                                                                    >  2:1277586/1‑140 (MQ=255)

                                                                     ttCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCgg                                                               >  1:16224/1‑140 (MQ=255)

                                                                        aCGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTc                                                            <  1:82082/140‑1 (MQ=255)

                                                                          gggATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGt                                                          >  2:26020/1‑140 (MQ=255)

                                                                           ggATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGCCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGtt                                                         <  1:1274053/140‑1 (MQ=255)

                                                                               ttCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTtctc                                                     >  2:605225/1‑140 (MQ=255)

                                                                               ttCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTtctc                                                     >  2:466944/1‑140 (MQ=255)

                                                                               ttCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTtctc                                                     >  2:413619/1‑140 (MQ=255)

                                                                                tCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCa                                                    <  1:1431687/140‑1 (MQ=255)

                                                                                tCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCa                                                    <  1:942170/140‑1 (MQ=255)

                                                                                      agCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGt                                                          <  1:1025437/128‑1 (MQ=255)

                                                                                      agCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATctct                                              >  1:754409/1‑140 (MQ=255)

                                                                                      agCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATctct                                              >  2:31262/1‑140 (MQ=255)

                                                                                       gccgccgccAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCGCATCAGCTCCGGTTCGTTTCTCAATCTGtt                                             >  2:1038776/1‑140 (MQ=255)

                                                                                        ccgccgccAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGt                                                          >  1:691736/1‑126 (MQ=255)

                                                                                        ccgccgccAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTg                                            >  2:200931/1‑140 (MQ=255)

                                                                                          gccgccAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGAt                                          <  2:1697149/140‑1 (MQ=255)

                                                                                           ccgccAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATc                                         >  1:408957/1‑140 (MQ=255)

                                                                                               cAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGaa                                     <  1:466944/140‑1 (MQ=255)

                                                                                               cAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGaa                                     <  1:317540/140‑1 (MQ=255)

                                                                                                aGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCa                                                    <  1:948955/124‑1 (MQ=255)

                                                                                                aGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTACGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAAt                                    >  1:812886/1‑140 (MQ=255)

                                                                                                  tAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCg                                  <  1:5640/140‑1 (MQ=255)

                                                                                                    gCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTa                                <  1:552529/140‑1 (MQ=255)

                                                                                                        gCACAATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAt                            <  2:16224/140‑1 (MQ=255)

                                                                                                         cacaATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAtt                           >  2:236797/1‑140 (MQ=255)

                                                                                                         cacaATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAtt                           <  1:236797/140‑1 (MQ=255)

                                                                                                         cacaATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAtt                           >  1:1327398/1‑140 (MQ=255)

                                                                                                         cacaATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAtt                           <  1:877827/140‑1 (MQ=255)

                                                                                                          acaATACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAtt                           <  1:273528/139‑1 (MQ=255)

                                                                                                            aaTACCCTGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCa                        <  1:200931/140‑1 (MQ=255)

                                                                                                                 ccTGATTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGCTGCCTTCCTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTg                   >  2:1175647/1‑140 (MQ=255)

                                                                                                                   tGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTa                                <  2:396284/125‑1 (MQ=255)

                                                                                                                   tGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAg                 <  1:1207087/140‑1 (MQ=255)

                                                                                                                   tGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAg                 <  1:506786/140‑1 (MQ=255)

                                                                                                                   tGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAg                 <  2:754409/140‑1 (MQ=255)

                                                                                                                   tGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAg                 >  1:1661931/1‑140 (MQ=255)

                                                                                                                   tGTTTCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAg                 >  1:29392/1‑140 (MQ=255)

                                                                                                                     tttCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAtt                           >  2:1318961/1‑128 (MQ=255)

                                                                                                                     tttCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAAtt                           <  1:1318961/128‑1 (MQ=255)

                                                                                                                     tttCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAgtt               <  1:1277586/140‑1 (MQ=255)

                                                                                                                     tttCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAgtt               >  2:1181426/1‑140 (MQ=255)

                                                                                                                      ttCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAgttg              >  1:1030571/1‑140 (MQ=255)

                                                                                                                      ttCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAgttg              >  2:866201/1‑140 (MQ=255)

                                                                                                                      ttCTCGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAgttg              <  2:297141/140‑1 (MQ=255)

                                                                                                                        ctcGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAgttgtt            >  1:212950/1‑140 (MQ=255)

                                                                                                                        ctcGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCC‑CCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGttgttg           >  2:309842/1‑140 (MQ=255)

                                                                                                                          cGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGa          >  2:1352912/1‑140 (MQ=255)

                                                                                                                          cGGTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGa          >  1:1675622/1‑140 (MQ=255)

                                                                                                                           ggTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAg         >  2:366528/1‑140 (MQ=255)

                                                                                                                           ggTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAg         >  1:1233796/1‑140 (MQ=255)

                                                                                                                           ggTCAACTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAg         <  1:366528/140‑1 (MQ=255)

                                                                                                                               aaCTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTaa     >  2:1667826/1‑140 (MQ=255)

                                                                                                                               aaCTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTaa     >  2:1452737/1‑140 (MQ=255)

                                                                                                                               aaCTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTaa     >  2:1181314/1‑140 (MQ=255)

                                                                                                                                aCTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAAc    <  1:1667826/140‑1 (MQ=255)

                                                                                                                                aCTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAAc    <  2:1661931/140‑1 (MQ=255)

                                                                                                                                aCTCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAAc    <  2:865330/140‑1 (MQ=255)

                                                                                                                                  tCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTg  <  2:1237683/140‑1 (MQ=255)

                                                                                                                                  tCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTg  <  1:605225/140‑1 (MQ=255)

                                                                                                                                  tCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTg  <  1:1552526/140‑1 (MQ=255)

                                                                                                                                  tCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTg  <  1:899777/140‑1 (MQ=255)

                                                                                                                                  tCATTGACGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTg  <  1:31262/140‑1 (MQ=255)

TGCAAGTTGCTTTTCGATGGTCGTTTCAAGATAAACGACAACGCCACGAGCGGAAAGACGGTTACGCGTTTCACGGGATTTCACAGAGCCGCCGCCAGTAGCCAGCACAATACCCTGTTTCTCGGTCAACTCATTGATGACCTTTTCTTCGCGATCGCGGAAGCCTTCTTCGCCTTCTAAATCGAAAACCCAGCCCACATCAGCTCCGGTTCGTTTCTCAATCTCTTGATCGGAATCGTAAAATTCCATATTGAGTTGTTGAGCTAACTG  >  NC_000913/3518729‑3518998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`