BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,351,689	A→G	intergenic (‑27/‑154)	dcuS ← / → yjdI	sensory histidine kinase DcuS/PF06902 family protein YjdI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,351,689	0	A	G	100.0%	753.5 / NA	202	intergenic (‑27/‑154)	dcuS/yjdI	sensory histidine kinase DcuS/PF06902 family protein YjdI
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (93/109); total (93/109)

Only 100 of 202 total aligned reads displayed.

ATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGCGATAATC  >  NC_000913/4351552‑4351819

  gCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCa                                                                                                                                <  2:411210/140‑1 (MQ=255)

  gCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCa                                                                                                                                >  1:248990/1‑140 (MQ=255)

  gCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCa                                                                                                                                >  1:1296034/1‑140 (MQ=255)

   caccacCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCAt                                                                                                                               <  1:606588/140‑1 (MQ=255)

      caccaATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCa                                                                                                                                >  1:514823/1‑136 (MQ=255)

      caccaATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCa                                                                                                                                <  2:514823/136‑1 (MQ=255)

        ccaATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTAtct                                                                                                                          >  1:727011/1‑140 (MQ=255)

          aaTAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATctct                                                                                                                        >  2:1640698/1‑140 (MQ=255)

           aTAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCtg                                                                                                                       <  2:938223/140‑1 (MQ=255)

             aGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCAtt                                                                                                                              >  2:1506484/1‑131 (MQ=255)

             aGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCAtt                                                                                                                              <  1:1506484/131‑1 (MQ=255)

               cACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCtgat                                                                                                                     <  1:101654/138‑1 (MQ=255)

               cACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCtgat                                                                                                                     >  2:101654/1‑138 (MQ=255)

                aCCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAg                                                                                                                  <  1:1124828/140‑1 (MQ=255)

                  cGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCtg                                                                                                                       >  1:186719/1‑133 (MQ=255)

                   gagaACAGTACCGCACTGACCATTAAGATCACTGTTGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCg                                                                                                               >  1:1194527/1‑140 (MQ=255)

                   gagaACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCAt                                                                                                                               >  1:261199/1‑124 (MQ=255)

                    agaACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCgg                                                                                                              >  1:1083519/1‑140 (MQ=255)

                      aaCAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGt                                                                                                            <  2:604752/140‑1 (MQ=255)

                      aaCAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGt                                                                                                            <  1:1653929/140‑1 (MQ=255)

                       aCAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTa                                                                                                           >  1:369899/1‑140 (MQ=255)

                            aCCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCa                                                                                                      <  1:510283/140‑1 (MQ=255)

                              cGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCaaa                                                                                                    <  2:1328593/140‑1 (MQ=255)

                              cGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCaaa                                                                                                    <  1:777509/140‑1 (MQ=255)

                              cGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCaaa                                                                                                    <  2:7508/140‑1 (MQ=255)

                               gCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAg                                                                                                   >  2:1035581/1‑140 (MQ=255)

                                cACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCaaa                                                                                                    >  1:770948/1‑138 (MQ=255)

                                cACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCaaa                                                                                                    <  2:770948/138‑1 (MQ=255)

                                  cTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGa                                                                                                <  2:1047840/140‑1 (MQ=255)

                                  cTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGa                                                                                                <  2:1142446/140‑1 (MQ=255)

                                   tGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCaaa                                                                                                    <  1:136645/135‑1 (MQ=255)

                                   tGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAg                                                                                               >  1:348799/1‑140 (MQ=255)

                                   tGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAg                                                                                               <  1:263717/140‑1 (MQ=255)

                                     atcATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTa                                                                                             >  1:868463/3‑140 (MQ=255)

                                     aCCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCaaa                                                                                                    >  1:856301/1‑133 (MQ=255)

                                     aCCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGa                                                                                                >  1:915202/1‑137 (MQ=255)

                                     aCCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGa                                                                                                <  2:915202/137‑1 (MQ=255)

                                     aCCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGGAATTTAAAgggggga                                                                                             >  2:1263792/1‑136 (MQ=255)

                                       cATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAg                                                                                           <  1:48058/140‑1 (MQ=255)

                                       aaTTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAg                                                                                           <  1:1371028/139‑1 (MQ=255)

                                           aaGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATg                                                                                       <  1:1232377/140‑1 (MQ=255)

                                             gATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGAt                                                                                     <  2:369899/140‑1 (MQ=255)

                                                cACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTgg                                                                                  <  1:912930/140‑1 (MQ=255)

                                                cACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTgg                                                                                  <  2:261506/140‑1 (MQ=255)

                                                cACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTgg                                                                                  <  2:30623/140‑1 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAGGGGGGAAGAATGATTggg                                                                                 >  2:1410049/1‑139 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAGGGAGGAAGAATTATTGGc                                                                                 >  1:1405563/1‑140 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAAGGAGGAAGAATGATTGGc                                                                                 >  2:1193454/1‑140 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAAGGAGGAAAAAAGAtttgg                                                                                 >  2:1219624/1‑137 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGAt                                                                                     >  1:79374/1‑136 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGc                                                                                 <  2:1470522/140‑1 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGc                                                                                 <  2:1390786/140‑1 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGc                                                                                 >  1:1470522/1‑140 (MQ=255)

                                                 aCTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGGAATTTAAAGGGAGTAAAAATGATTggg                                                                                 >  2:1571922/1‑139 (MQ=255)

                                                   tgtgGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCta                                                                               <  2:1296034/140‑1 (MQ=255)

                                                   tgtgGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCta                                                                               >  2:498575/1‑140 (MQ=255)

                                                      ggTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCtatat                                                                            <  2:725755/140‑1 (MQ=255)

                                                       gTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCtatata                                                                           >  1:1327070/1‑140 (MQ=255)

                                                       gTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCtatata                                                                           <  2:219162/140‑1 (MQ=255)

                                                       gTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGAAATTTAAAGGGGGGAAGAAAGAATgggtcttta                                                                           >  1:1164005/1‑133 (MQ=255)

                                                          cTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTg                                                                                   >  1:1041465/1‑129 (MQ=255)

                                                          cTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGCGAATTAAAGGGAGTAAGAAGGATTTGGTATTTAggg                                                                        >  1:541808/1‑140 (MQ=255)

                                                             aaTTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAGGGAGGAAGAATGATTGGCTATATAggggga                                                                     >  2:1364895/1‑138 (MQ=255)

                                                             aaTTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCtatata                                                                           <  2:827638/134‑1 (MQ=255)

                                                                  cATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGAc                                                                <  1:1571922/140‑1 (MQ=255)

                                                                      ggACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTg                                                            <  1:530215/140‑1 (MQ=255)

                                                                       gACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAGGGGGGAAGAATGATTGGCTATATAGGGGGAGAGAATCTgg                                                           >  2:1383669/1‑140 (MQ=255)

                                                                         cGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGGAATTTAAAGGGAGTAAGAATGATTGGCTATATAGGGGGAGAGACTCTGGCa                                                         >  2:530215/1‑140 (MQ=255)

                                                                            ttGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACg                                                      <  1:1399004/140‑1 (MQ=255)

                                                                             tGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTg                                                            <  2:671732/133‑1 (MQ=255)

                                                                             tGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTg                                                            >  1:671732/1‑133 (MQ=255)

                                                                              gCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGa                                                    <  2:1402833/140‑1 (MQ=255)

                                                                               cGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGaa                                                   <  2:248990/140‑1 (MQ=255)

                                                                                        cGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGt                                          <  2:348799/140‑1 (MQ=255)

                                                                                        cGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGt                                          <  1:603053/140‑1 (MQ=255)

                                                                                         ggTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTg                                         <  2:957834/140‑1 (MQ=255)

                                                                                          gTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGc                                        <  1:1052267/140‑1 (MQ=255)

                                                                                              ggCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGa                                                    <  1:1407853/124‑1 (MQ=255)

                                                                                                 aatgaatgTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGa                                 <  1:1640698/140‑1 (MQ=255)

                                                                                                  atgaatgTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAGGGAGGAAGAATGATTTGGTATATAGGGGGAGAGACTCTGGCAACGGGAAATGCCAGTGCTGTATGaa                                >  2:43881/1‑140 (MQ=255)

                                                                                                  atgaatgTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGaa                                <  1:944263/140‑1 (MQ=255)

                                                                                                  atgaatgTCTCATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGaa                                <  1:388341/140‑1 (MQ=255)

                                                                                                         tctcATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCg                         <  2:352531/140‑1 (MQ=255)

                                                                                                         tctcATCAGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCg                         <  2:85652/140‑1 (MQ=255)

                                                                                                           tcatcaGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCggg                       <  2:1083519/140‑1 (MQ=255)

                                                                                                             atcaGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGc                     <  1:423022/140‑1 (MQ=255)

                                                                                                             atcaGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGG‑AACTGCCAGTGCTGTATGAAGATTCCGGGGCt                    <  2:467870/140‑1 (MQ=255)

                                                                                                             atcaGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTC‑AAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCt                    <  2:784142/140‑1 (MQ=255)

                                                                                                             acaggCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGc                     <  1:458034/136‑1 (MQ=255)

                                                                                                              tcaGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCt                    <  2:908587/140‑1 (MQ=255)

                                                                                                               caGCTTCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTa                   <  1:966804/140‑1 (MQ=255)

                                                                                                                    tCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCg                         <  1:1097582/129‑1 (MQ=255)

                                                                                                                    tCCTTGTGTGACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCg                         >  2:1097582/1‑129 (MQ=255)

                                                                                                                        tgtgtgACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTTAAAGGGAGTAAGAATGATTGGCTATATAGGGGGAGAGACTCTTGCAACGGAAAATGCCAGTGCTGTATGAAGATTTCGGGGGTATGCTtataa          >  2:134998/1‑139 (MQ=255)

                                                                                                                         gtgtgACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGc         <  2:868463/140‑1 (MQ=255)

                                                                                                                         gtgtgACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGc         <  1:1293918/140‑1 (MQ=255)

                                                                                                                           gtgACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGCGa       <  1:2272/140‑1 (MQ=255)

                                                                                                                           gtgACAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGCGa       <  1:1035581/140‑1 (MQ=255)

                                                                                                                              aCAAATTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGCGATaa    <  2:1164005/140‑1 (MQ=255)

                                                                                                                                aaaTTTCTTGAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGCGATAATc  <  1:1335036/140‑1 (MQ=255)

ATGCACCACCAATAGCACCGAGAACAGTACCGCACTGACCATTAAGATCACTGTGGTACTCAATTTCATCGGACGTTTGCGTAACATGCGGTAGGGCAATGAATGTCTCATCAGCTTCCTTGTGTGACAAATTTCTTAAGCATTATCTCTGATGAGGCGGGTAATTCAAAGGGAGTAAGAATGATTGGCTATATAGGGGAAGAGACTCTGGCAACGGAAACTGCCAGTGCTGTATGAAGATTCCGGGGCTATGCTTATAGCGATAATC  >  NC_000913/4351552‑4351819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`