BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,139,399	(A)_5→4	coding (1022/1644 nt)	flgK →	flagellar hook‑filament junction protein 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,139,395	0	A	.	100.0%	642.5 / NA	151	coding (1018/1644 nt)	flgK	flagellar hook‑filament junction protein 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (64/87); total (64/87)

Only 100 of 165 total aligned reads displayed.

GACGCGTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGAAAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATACCACTTTTACGGTGA  >  NC_000913/1139256‑1139530

gACGCGTAATACGCTTGGACAACTGGCTCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGa                                                                                                                                         >  1:167841/1‑140 (MQ=255)

gACGCGTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGa                                                                                                                                         <  1:887542/140‑1 (MQ=255)

gACGCGTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGa                                                                                                                                         >  1:3260440/1‑140 (MQ=255)

 aCGCGTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGaa                                                                                                                                        >  2:637748/1‑140 (MQ=255)

 aCGCGTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGaa                                                                                                                                        <  2:2438554/140‑1 (MQ=255)

 aCGCGTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGaa                                                                                                                                        >  2:204286/1‑140 (MQ=255)

  cgcgTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGaaa                                                                                                                                       <  1:2144215/140‑1 (MQ=255)

  cgcgTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGaaa                                                                                                                                       <  1:204286/140‑1 (MQ=255)

     gTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGaaaaca                                                                                                                                    >  1:924015/1‑138 (MQ=255)

           cGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTg                                                                                                                             >  1:46563/1‑140 (MQ=255)

              ttGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACg                                                                                                                          >  2:2012777/1‑140 (MQ=255)

                ggACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAg                                                                                                                                >  1:2284315/1‑132 (MQ=255)

                ggACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGtt                                                                                                                        >  2:2828988/1‑140 (MQ=255)

                 gACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTg                                                                                                                       <  1:1851092/140‑1 (MQ=255)

                 gACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTg                                                                                                                       >  1:2627825/1‑140 (MQ=255)

                     aCTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGAt                                                                                                                   <  1:654096/140‑1 (MQ=255)

                     aCTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGAt                                                                                                                   <  1:296053/140‑1 (MQ=255)

                     aCTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGAt                                                                                                                   <  1:2828988/140‑1 (MQ=255)

                     aCTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGAt                                                                                                                   <  2:1320483/140‑1 (MQ=255)

                     aCTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGAt                                                                                                                   <  2:139338/140‑1 (MQ=255)

                      cTGGCNCNGGCNTTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATc                                                                                                                  >  2:179454/1‑140 (MQ=255)

                      cTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATc                                                                                                                  >  2:2030872/1‑140 (MQ=255)

                        ggCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCgg                                                                                                                >  1:1965244/1‑140 (MQ=255)

                         gcgcTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGt                                                                                                               <  2:1301508/140‑1 (MQ=255)

                         gcgcTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGt                                                                                                               <  1:3331807/140‑1 (MQ=255)

                         gcgcTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGt                                                                                                               <  1:2850155/140‑1 (MQ=255)

                            cTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGcc                                                                                                            >  2:2503328/1‑140 (MQ=255)

                            cTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGcc                                                                                                            <  1:1331027/140‑1 (MQ=255)

                                cATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACgg                                                                                                        <  2:3135860/140‑1 (MQ=255)

                                 aTTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGt                                                                                                       <  1:1107482/140‑1 (MQ=255)

                                 aTTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGt                                                                                                       <  1:1452995/140‑1 (MQ=255)

                                  tttGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTa                                                                                                      <  1:2515318/140‑1 (MQ=255)

                                       cGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACgg                                                                                                        <  2:1613593/133‑1 (MQ=255)

                                       cGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACgg                                                                                                        >  1:1613593/1‑133 (MQ=255)

                                        gAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGAt                                                                                                <  1:2575622/140‑1 (MQ=255)

                                         aGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGc                                                                                                             >  2:655882/1‑126 (MQ=255)

                                         aGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGc                                                                                                             <  1:655882/126‑1 (MQ=255)

                                          ggCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGc                                                                                              <  2:760062/140‑1 (MQ=255)

                                          ggCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGc                                                                                              <  1:2489852/140‑1 (MQ=255)

                                          ggCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGc                                                                                              <  1:619005/140‑1 (MQ=255)

                                             tttCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTc                                                                                           >  1:1429569/1‑140 (MQ=255)

                                               tCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCcg                                                                                         <  1:1812538/140‑1 (MQ=255)

                                               tCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCcg                                                                                         <  1:2096641/140‑1 (MQ=255)

                                               tCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCcg                                                                                         <  1:1771212/140‑1 (MQ=255)

                                                cAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCcgc                                                                                        >  1:3207623/1‑140 (MQ=255)

                                                 aaCACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCcgcg                                                                                       <  2:1400878/140‑1 (MQ=255)

                                                        aaCACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTgg                                                                                >  2:1242187/1‑140 (MQ=255)

                                                          cacaAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCg                                                                              <  2:3136945/140‑1 (MQ=255)

                                                             aaaGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACa                                                                           <  2:1850512/140‑1 (MQ=255)

                                                              aaGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAg                                                                          <  1:461562/140‑1 (MQ=255)

                                                               aGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGa                                                                             >  1:3112099/1‑136 (MQ=255)

                                                                gCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGa                                                                             >  1:2010257/1‑135 (MQ=255)

                                                                gCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGAt                                                                        >  2:2897172/1‑140 (MQ=255)

                                                                  cGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGc                                                                               >  2:3108719/1‑131 (MQ=255)

                                                                  cGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGc                                                                               <  1:3108719/131‑1 (MQ=255)

                                                                    gATTTGCTGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCCGTTCTGCAAAACACG‑AAAACAAAGGCGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACa                                                                    >  2:238818/1‑140 (MQ=255)

                                                                    gATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACa                                                                    >  2:3313100/1‑140 (MQ=255)

                                                                         gATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAAtc                                                               >  2:1682946/1‑140 (MQ=255)

                                                                           tGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAAtctc                                                             >  1:2781787/1‑140 (MQ=255)

                                                                              tAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTTACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          <  2:558251/140‑1 (MQ=255)

                                                                              tAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          <  1:2383426/140‑1 (MQ=255)

                                                                              tAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          <  1:3476634/140‑1 (MQ=255)

                                                                              tAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          <  1:3139911/140‑1 (MQ=255)

                                                                                   gCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGata                                                     <  1:2503328/140‑1 (MQ=255)

                                                                                       tGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGAtaataa                                                 >  2:3004958/1‑140 (MQ=255)

                                                                                        gCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATaataat                                                <  2:42466/140‑1 (MQ=255)

                                                                                            gTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          >  2:2864388/1‑126 (MQ=255)

                                                                                            gTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          <  2:2270870/126‑1 (MQ=255)

                                                                                            gTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          <  1:2864388/126‑1 (MQ=255)

                                                                                            gTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          <  2:2130204/126‑1 (MQ=255)

                                                                                            gTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          >  1:2130204/1‑126 (MQ=255)

                                                                                            gTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGtt                                                          >  1:2270870/1‑126 (MQ=255)

                                                                                            gTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGt                                            >  1:1672237/1‑140 (MQ=255)

                                                                                              gAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTgg                                          <  2:1032465/140‑1 (MQ=255)

                                                                                               aaGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGc                                         <  2:2761105/140‑1 (MQ=255)

                                                                                                aGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCa                                        <  2:924015/140‑1 (MQ=255)

                                                                                                aGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCa                                        <  2:2781787/140‑1 (MQ=255)

                                                                                                    ttCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGataata                                                  <  1:41243/126‑1 (MQ=255)

                                                                                                    ttCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGataata                                                  >  2:41243/1‑126 (MQ=255)

                                                                                                     tCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCa                                   <  2:167498/140‑1 (MQ=255)

                                                                                                         tGCTATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCAcc                                 <  2:2612071/138‑1 (MQ=255)

                                                                                                            tATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCt                            >  2:3152021/1‑140 (MQ=255)

                                                                                                            tATCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCt                            >  1:761665/1‑140 (MQ=255)

                                                                                                             aTCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCtt                           <  2:220887/140‑1 (MQ=255)

                                                                                                             aTCGGTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTAC‑AAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTg                          <  2:175818/140‑1 (MQ=255)

                                                                                                                ggTAAGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGcc                        >  2:3420994/1‑140 (MQ=255)

                                                                                                                    aGCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCa                    <  1:2897172/140‑1 (MQ=255)

                                                                                                                     gCCCGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGGCTCCGCGGTACGGGCGACAGATTACAAAATCTCGTTCGATAATAACCAGTGGCAGGTCACCCGCCTTGCCAGCaa                   <  2:2846490/140‑1 (MQ=255)

                                                                                                                      cccGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATGATCAGTGGCAGGTCACCCGCCTTGCCAGCAAt                  >  2:501278/1‑140 (MQ=255)

                                                                                                                      cccGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAAt                  <  1:2459458/140‑1 (MQ=255)

                                                                                                                      cccGCGGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAAt                  <  1:2686600/140‑1 (MQ=255)

                                                                                                                        cgcgGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAg                      <  1:2617875/134‑1 (MQ=255)

                                                                                                                        cgcgGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAg                      >  2:2617875/1‑134 (MQ=255)

                                                                                                                        cgcgGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATAc                <  1:1242187/140‑1 (MQ=255)

                                                                                                                        cgcgGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATAc                <  2:1965244/140‑1 (MQ=255)

                                                                                                                        cgcgGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATAc                <  2:298792/140‑1 (MQ=255)

                                                                                                                          cgGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATACCa              >  2:3288024/1‑140 (MQ=255)

                                                                                                                          cgGTTCTGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATACCa              >  2:2292255/1‑140 (MQ=255)

                                                                                                                                tGCAAAACACG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATACCACTTTTa        >  2:804326/1‑140 (MQ=255)

                                                                                                                                      acacG‑AAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATACCACTTTTACGGTGa  <  2:1452814/140‑1 (MQ=255)

GACGCGTAATACGCTTGGACAACTGGCGCTGGCATTTGCCGAGGCTTTCAACACCCAACACAAAGCCGGATTTGATGCTAACGGCGATGCCGGTGAAGATTTCTTTGCTATCGGTAAGCCCGCGGTTCTGCAAAACACGAAAAACAAAGGTGACGTTGCGATCGGTGCCACGGTAACTGATGCCTCCGCGGTACTGGCGACAGATTACAAAATCTCGTTCGATAATAATCAGTGGCAGGTCACCCGCCTTGCCAGCAATACCACTTTTACGGTGA  >  NC_000913/1139256‑1139530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`