BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,597,382	(T)_6→5	pseudogene (705/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,597,377	0	T	.	100.0%	634.2 / NA	149	pseudogene (710/5422 nt)	yneO	AIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (68/81); total (68/81)

Only 100 of 165 total aligned reads displayed.

ATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGCCATAGCTAC  >  NC_000913/1597238‑1597512

aTCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCattat                                                                                                                                         <  2:1094997/140‑1 (MQ=255)

  ccTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttt                                                                                                                                       <  1:980044/140‑1 (MQ=255)

    tGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttt                                                                                                                                     >  1:1675910/1‑140 (MQ=255)

     gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCattat                                                                                                                                         <  1:1400344/135‑1 (MQ=255)

     gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCattat                                                                                                                                         >  2:1400344/1‑135 (MQ=255)

     gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttta                                                                                                                                    >  1:1237716/1‑139 (MQ=255)

     gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttta                                                                                                                                    >  1:239332/1‑139 (MQ=255)

     gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttta                                                                                                                                    >  1:204579/1‑139 (MQ=255)

     gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAttttta                                                                                                                                    >  2:236024/1‑139 (MQ=255)

       acaTTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAtttttatt                                                                                                                                  >  2:904503/1‑137 (MQ=255)

           tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGcc                                                                                                                             >  1:182784/1‑140 (MQ=255)

                gTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCg                                                                                                                        >  1:3215895/1‑140 (MQ=255)

                 ttCCGATTCCGGTGGCATTGGCACCGATTATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGc                                                                                                                       <  2:1116831/140‑1 (MQ=255)

                   ccGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCa                                                                                                                     <  2:265150/140‑1 (MQ=255)

                   ccGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCa                                                                                                                     >  1:1931528/1‑140 (MQ=255)

                    cGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCAc                                                                                                                    >  2:361368/1‑140 (MQ=255)

                     gATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTTGCCAcc                                                                                                                   >  1:458391/1‑140 (MQ=255)

                           ggTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTc                                                                                                             >  2:3411286/1‑140 (MQ=255)

                            gTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCa                                                                                                            >  1:1974628/1‑140 (MQ=255)

                                    gCCTCCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                                                                                                    <  2:2881173/140‑1 (MQ=255)

                                    gCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                                                                                                    <  2:524308/140‑1 (MQ=255)

                                    gCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                                                                                                    <  2:3448787/140‑1 (MQ=255)

                                    gCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                                                                                                    <  1:3254951/140‑1 (MQ=255)

                                    gCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                                                                                                    <  2:1683887/140‑1 (MQ=255)

                                     ccACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAcc                                                                                                   >  2:1225441/1‑140 (MQ=255)

                                       aCCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTg                                                                                                 >  1:1555338/1‑140 (MQ=255)

                                        ccGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTgg                                                                                                <  2:2953275/140‑1 (MQ=255)

                                         cGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGc                                                                                               >  2:1488161/1‑140 (MQ=255)

                                          gATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGcc                                                                                              >  2:3361615/1‑140 (MQ=255)

                                           aTAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCa                                                                                             >  2:532039/1‑140 (MQ=255)

                                            tAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCAt                                                                                            <  1:3361615/140‑1 (MQ=255)

                                              aTCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTa                                                                                          <  2:1682692/140‑1 (MQ=255)

                                               tCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGa                                                                                                        <  1:3489910/125‑1 (MQ=255)

                                               tCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGa                                                                                                        >  2:3489910/1‑125 (MQ=255)

                                               tCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTAc                                                                                         >  1:344590/1‑140 (MQ=255)

                                                  tATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGc                                                                                      >  2:2232591/1‑140 (MQ=255)

                                                   aTTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc                                                                                                    >  1:2396592/1‑125 (MQ=255)

                                                   aTTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGcc                                                                                     >  1:2169383/1‑140 (MQ=255)

                                                    ttttCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGccc                                                                                    <  2:2881345/140‑1 (MQ=255)

                                                    ttttCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGccc                                                                                    >  2:1780603/1‑140 (MQ=255)

                                                     tttCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCg                                                                                   <  1:94822/140‑1 (MQ=255)

                                                      ttCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGc                                                                                  >  2:1560389/1‑140 (MQ=255)

                                                          gCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGa                                                                              <  1:361368/140‑1 (MQ=255)

                                                          gCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGa                                                                              <  2:344590/140‑1 (MQ=255)

                                                              tAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGc                                                                          >  2:909101/1‑140 (MQ=255)

                                                                accaaccCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCt                                                                        >  1:2906986/1‑140 (MQ=255)

                                                                     cccccccTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAAt                                                                   >  2:1647442/1‑140 (MQ=255)

                                                                        ccccTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGc                                                                >  1:852594/1‑140 (MQ=255)

                                                                        ccccTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGc                                                                <  1:290581/140‑1 (MQ=255)

                                                                          ccTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGcga                                                              >  2:2689634/1‑140 (MQ=255)

                                                                            tCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGcgacg                                                            >  2:1953898/1‑140 (MQ=255)

                                                                               cgAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGAtt                                                         >  1:2562351/1‑140 (MQ=255)

                                                                                     gTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTc                                                   <  2:370744/140‑1 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGCGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGACCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTct                                                  >  2:2741078/1‑139 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGcga                                                              <  2:3260502/128‑1 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGcga                                                              <  2:2300867/128‑1 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGcga                                                              >  1:2300867/1‑128 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCg                                                  >  2:453838/1‑140 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCg                                                  <  1:1900449/140‑1 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCg                                                  <  2:2038759/140‑1 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCg                                                  <  1:2662369/140‑1 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCg                                                  <  1:532039/140‑1 (MQ=255)

                                                                                      tCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCg                                                  <  1:908866/140‑1 (MQ=255)

                                                                                       cGCCTCCCCAGTTCCTTGATTCCCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGt                                                 <  2:2906986/140‑1 (MQ=255)

                                                                                        gCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTg                                                >  2:808947/1‑140 (MQ=255)

                                                                                           tCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACg                                             <  2:325132/140‑1 (MQ=255)

                                                                                            ccccAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGt                                            <  1:808947/140‑1 (MQ=255)

                                                                                            ccccAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGt                                            <  1:230717/140‑1 (MQ=255)

                                                                                              ccAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACg                                             >  1:1749756/1‑137 (MQ=255)

                                                                                                   tCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCtt                                     <  2:1237716/140‑1 (MQ=255)

                                                                                                    ccTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTa                                    >  2:321806/1‑140 (MQ=255)

                                                                                                    ccTTGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGT‑ACCCTTAt                                   >  1:1279517/1‑140 (MQ=255)

                                                                                                       tGATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCg                                                  <  1:3474696/123‑1 (MQ=255)

                                                                                                        gATTACCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCg                                <  1:1225441/140‑1 (MQ=255)

                                                                                                            aCCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCGCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGt                               >  2:1924206/1‑137 (MQ=255)

                                                                                                            aCCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCtt                                     >  2:2979600/1‑131 (MQ=255)

                                                                                                            aCCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCtt                                     <  1:2979600/131‑1 (MQ=255)

                                                                                                            aCCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAat                            >  1:1005416/1‑140 (MQ=255)

                                                                                                            aCCAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAat                            >  1:271203/1‑140 (MQ=255)

                                                                                                              cAATTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAatat                          >  2:2356713/1‑140 (MQ=255)

                                                                                                                aTTTGAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATAttt                        >  1:2120494/1‑140 (MQ=255)

                                                                                                                    gAAATTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATg                    >  1:2019338/1‑140 (MQ=255)

                                                                                                                     aaaTTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGa                   <  1:1647442/140‑1 (MQ=255)

                                                                                                                     aaaTTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGa                   >  2:653776/1‑140 (MQ=255)

                                                                                                                      aaTTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAata                           >  2:2240537/1‑131 (MQ=255)

                                                                                                                      aaTTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAata                           <  1:2240537/131‑1 (MQ=255)

                                                                                                                       aTTCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAAc                 <  1:1382362/140‑1 (MQ=255)

                                                                                                                       aTTCAATTGAGGAATCAGTA‑TTTTTAGTAGCAACTCCCCGCCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACGCGTGACGTATCCCTTAACCGTAATATTTAATGagc                 <  2:1036225/140‑3 (MQ=255)

                                                                                                                        ttCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAAcc                <  1:453838/140‑1 (MQ=255)

                                                                                                                         tCAATTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCt               <  1:2596172/140‑1 (MQ=255)

                                                                                                                            aTTGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCtgtg            <  2:2019338/140‑1 (MQ=255)

                                                                                                                             ttGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGc           <  1:904503/140‑1 (MQ=255)

                                                                                                                             ttGAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGc           <  1:653776/140‑1 (MQ=255)

                                                                                                                               gAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAata                           <  1:1092006/122‑1 (MQ=255)

                                                                                                                               gAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGCCa         >  2:3369457/1‑140 (MQ=255)

                                                                                                                               gAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGCCa         <  2:2120494/140‑1 (MQ=255)

                                                                                                                               gAGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGCCa         <  1:321806/140‑1 (MQ=255)

                                                                                                                                aGGAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGCCAt        >  2:2540445/1‑140 (MQ=255)

                                                                                                                                  gAATCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAAc                 >  1:3302932/1‑129 (MQ=255)

                                                                                                                                     tCATTA‑TTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGT‑ACCCTTATCCGTAATATTTAATGAACCTGTGCCATAGCTAc  <  2:1279517/140‑1 (MQ=255)

ATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGCCTGATAGCCTAAAATGGCGACGATTGAACTCGTGACGTAACCCTTATCCGTAATATTTAATGAACCTGTGCCATAGCTAC  >  NC_000913/1597238‑1597512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`