Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 531,620 T→C D201G (GAC→GGC)  allS ← DNA‑binding transcriptional activator AllS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913531,6200TC100.0% 520.9 / NA 144D201G (GAC→GGC) allSDNA‑binding transcriptional activator AllS
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (70/74);  total (70/74)

Only 100 of 148 total aligned reads displayed.

GGCAAAGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGTCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCAAGACTAAAGGTAT  >  NC_000913/531483‑531752
                                                                                                                                         |                                                                                                                                    
ggCAAAGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCt                                                                                                                                    >  2:1238827/1‑140 (MQ=255)
 gCAAAGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCtt                                                                                                                                   >  1:1108423/1‑140 (MQ=255)
 gCAAAGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCtt                                                                                                                                   >  2:2587069/1‑140 (MQ=255)
 gCAAAGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCtt                                                                                                                                   >  1:70819/1‑140 (MQ=255)
     aGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAat                                                                                                                               >  2:3478882/1‑140 (MQ=255)
     aGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAat                                                                                                                               >  1:1869277/1‑140 (MQ=255)
        gATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATAtt                                                                                                                            <  2:2274000/140‑1 (MQ=255)
         aTTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTg                                                                                                                           >  1:1535593/1‑140 (MQ=255)
           tttGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGAc                                                                                                                         >  2:2828338/1‑140 (MQ=255)
                 aaaaaaCCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCgg                                                                                                                   >  2:303390/1‑140 (MQ=255)
                     aaCCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAg                                                                                                               <  1:1458732/140‑1 (MQ=255)
                      aCCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAgc                                                                                                              >  1:881861/1‑140 (MQ=255)
                              cAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAAc                                                                                                      <  1:1478210/140‑1 (MQ=255)
                               aaCGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACt                                                                                                     <  1:1353119/140‑1 (MQ=255)
                                aCGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTg                                                                                                    <  1:1310674/140‑1 (MQ=255)
                                aCGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTg                                                                                                    >  1:2125401/1‑140 (MQ=255)
                                 cgcccgccAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTgc                                                                                                   <  2:1869277/140‑1 (MQ=255)
                                  gcccgccAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTgcg                                                                                                  >  1:3201633/1‑140 (MQ=255)
                                  gcccgccAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTgcg                                                                                                  <  2:3333937/140‑1 (MQ=255)
                                      gccAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTc                                                                                              >  2:1383003/1‑140 (MQ=255)
                                      gccAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTc                                                                                              >  1:1345646/1‑140 (MQ=255)
                                       ccAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCt                                                                                             >  1:2267944/1‑140 (MQ=255)
                                          gATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGtt                                                                                          <  2:2043556/140‑1 (MQ=255)
                                               gcggcgATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCgg                                                                                     <  2:1436608/140‑1 (MQ=255)
                                                cggcgATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGc                                                                                    >  2:2857092/1‑140 (MQ=255)
                                                  gcgATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAg                                                                                        >  1:1774908/1‑134 (MQ=255)
                                                    gATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCtt                                                                                <  1:403221/140‑1 (MQ=255)
                                                    gATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCtt                                                                                <  2:1293751/140‑1 (MQ=255)
                                                             ttCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCg                                                                       >  2:1413737/1‑140 (MQ=255)
                                                               ccATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGcc                                                                     <  2:151356/140‑1 (MQ=255)
                                                               ccATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGcc                                                                     <  2:2267944/140‑1 (MQ=255)
                                                                cATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCa                                                                    >  1:2777416/1‑140 (MQ=255)
                                                                  tatCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGCCCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCg                                                                       <  1:2560075/135‑1 (MQ=255)
                                                                  tatCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCg                                                                       >  2:2560075/1‑135 (MQ=255)
                                                                       ggAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGgatg                                                             >  2:845397/1‑140 (MQ=255)
                                                                       ggAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGgatg                                                             >  2:2976163/1‑140 (MQ=255)
                                                                        gAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGga                                                               >  2:1291807/1‑137 (MQ=255)
                                                                         aaCAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGATCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCgg                                                                >  1:2366215/1‑135 (MQ=255)
                                                                         aaCAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTc                                                                        <  1:2257794/127‑1 (MQ=255)
                                                                         aaCAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCgg                                                                <  2:2366215/135‑1 (MQ=255)
                                                                         aaCAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGgatgat                                                           >  1:964625/1‑140 (MQ=255)
                                                                          aCAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGcc                                                                     <  2:1525604/129‑1 (MQ=255)
                                                                          aCAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGcc                                                                     >  1:1525604/1‑129 (MQ=255)
                                                                          aCAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATc                                                          >  2:2644226/1‑140 (MQ=255)
                                                                            aataatCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGTGGCTCTTCAACGTTCGCCAGCGGATGATccg                                                        >  2:3031129/1‑140 (MQ=255)
                                                                             ataatCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc                                                       <  2:2767800/140‑1 (MQ=255)
                                                                             ataatCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc                                                       <  1:2963701/140‑1 (MQ=255)
                                                                                  ctctTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCa                                                  >  2:1158099/1‑140 (MQ=255)
                                                                                   tctTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCAt                                                 <  1:775512/140‑1 (MQ=255)
                                                                                    ctTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATg                                                >  2:2403341/1‑140 (MQ=255)
                                                                                     tttttGCCCTTGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc                                                       <  1:2887979/132‑1 (MQ=255)
                                                                                      ttttGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGAc                                              >  1:122418/1‑140 (MQ=255)
                                                                                        ttGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGATCGCCAGCGGATGATCCGCCGCCATGACaa                                            >  1:3377472/1‑140 (MQ=255)
                                                                                          gCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAg                                          <  1:615784/140‑1 (MQ=255)
                                                                                          gCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAg                                          <  2:892898/140‑1 (MQ=255)
                                                                                          gCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAg                                          <  1:1917591/140‑1 (MQ=255)
                                                                                          gCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAg                                          <  2:2809664/140‑1 (MQ=255)
                                                                                          gCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAg                                          <  1:2976163/140‑1 (MQ=255)
                                                                                          gCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAg                                          <  2:2176884/140‑1 (MQ=255)
                                                                                          gCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAg                                          <  2:1108423/140‑1 (MQ=255)
                                                                                           cccTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGGGGGCACTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAgc                                         >  2:2653682/1‑140 (MQ=255)
                                                                                               ggCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACa                                             <  2:40507/132‑1 (MQ=255)
                                                                                               ggCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCa                                     >  1:3061504/1‑140 (MQ=255)
                                                                                               ggCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCa                                     >  2:2149155/1‑140 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGa                                               <  1:2610928/124‑1 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               <  1:1285669/140‑1 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               <  2:751878/140‑1 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               >  2:706703/1‑140 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               >  1:131274/1‑140 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               <  1:2982147/140‑1 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               <  2:2892821/140‑1 (MQ=255)
                                                                                                     cGCCAGGCGACGCGTTTGATTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               <  1:3405449/140‑1 (MQ=255)
                                                                                                      gCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAcc                              <  2:1535593/140‑1 (MQ=255)
                                                                                                      gCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAcc                              <  1:14281/140‑1 (MQ=255)
                                                                                                      gCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAcc                              >  2:1806913/1‑140 (MQ=255)
                                                                                                        cAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGa                            <  1:1806913/140‑1 (MQ=255)
                                                                                                          ggCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAcc                              <  2:1445293/136‑1 (MQ=255)
                                                                                                          ggCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATc                          >  1:183179/1‑140 (MQ=255)
                                                                                                          ggCGACGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATc                          >  1:1743822/1‑140 (MQ=255)
                                                                                                              aCGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCa                                <  2:1512933/130‑1 (MQ=255)
                                                                                                              aCGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTaa                      <  1:2403341/140‑1 (MQ=255)
                                                                                                              aCGCGTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTaa                      >  2:1982646/1‑140 (MQ=255)
                                                                                                               cgcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATTTTGACCGCCGGAAAGCGCCGCAACCGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCTGCCATGACAAAGCGCCATTGCACCGATCCTAAg                     <  2:1700633/140‑1 (MQ=255)
                                                                                                               cgcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAcc                              <  2:3249159/131‑1 (MQ=255)
                                                                                                               cgcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCAc                               >  2:3111339/1‑130 (MQ=255)
                                                                                                               cgcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAg                     <  2:2871243/140‑1 (MQ=255)
                                                                                                               cgcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAg                     <  1:1413737/140‑1 (MQ=255)
                                                                                                               cgcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGAATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTaa                      <  1:2445690/139‑1 (MQ=255)
                                                                                                                gcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAgg                    >  1:3126649/1‑140 (MQ=255)
                                                                                                                gcgTTTGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAgg                    >  2:161946/1‑140 (MQ=255)
                                                                                                                    ttGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGTGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATc                <  1:3031129/140‑1 (MQ=255)
                                                                                                                    ttGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATc                <  2:3421961/140‑1 (MQ=255)
                                                                                                                    ttGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATc                <  1:2149155/140‑1 (MQ=255)
                                                                                                                     tGGTTAAGGTGCGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCa               >  2:637758/1‑140 (MQ=255)
                                                                                                                            gttGCGGGCGCTCCCTTCAATATTGACCGCCGGAAACCGCCGCAACTGCGTTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCGCCGATCCTAAGGGATCAAGACTaa        <  2:3090535/138‑1 (MQ=255)
                                                                                                                            ggTGGGGGCACTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCAAGACTaa        <  1:2653682/140‑1 (MQ=255)
                                                                                                                                cGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCAAGACTAAAGGt    >  1:3489855/1‑140 (MQ=255)
                                                                                                                                cGGGCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCAAGACTAAAGGt    >  2:744549/1‑140 (MQ=255)
                                                                                                                                  ggCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCAAGACTaa        <  1:48570/134‑1 (MQ=255)
                                                                                                                                  ggCGCTGCCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCAAGACTaa        >  2:48570/1‑134 (MQ=255)
                                                                                                                                         |                                                                                                                                    
GGCAAAGCGATTTTGGCAAAAAACCAATGCCAACGCCCGCCAGATGGGCGGCGATTTTCGTTTCCATATCGGGAACAATAATCTCTTTTTGCCCTGGCAATCGCCAGGCGACGCGTTTGGTTAAGGTGCGGGCGCTGTCTTCAATATTGACCGCCGGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGCCGCCATGACAAAGCGCCATTGCACCGATCCTAAGGGATCAAGACTAAAGGTAT  >  NC_000913/531483‑531752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑