BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,652,044	T→C	pseudogene (533/1197 nt)	intQ →	Qin prophage; putative defective integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,652,044	0	T	C	100.0%	902.2 / NA	247	pseudogene (533/1197 nt)	intQ	Qin prophage; putative defective integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (99/148); total (99/148)

Only 100 of 250 total aligned reads displayed.

AATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGAT  >  NC_000913/1651908‑1652179

aatTACATGACAAATCTTAACGCCGTGTTCCATTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCg                                                                                                                                      <  1:512818/140‑1 (MQ=255)

aatTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCg                                                                                                                                      <  2:696596/140‑1 (MQ=255)

aatTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCg                                                                                                                                      <  1:1676587/140‑1 (MQ=255)

     cATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTa                                                                                                                                 >  1:950724/1‑140 (MQ=255)

       tGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATc                                                                                                                               >  1:3398599/1‑140 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            <  1:2819097/140‑1 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            <  2:2822508/140‑1 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            <  2:2864887/140‑1 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            >  1:2293044/1‑140 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            >  2:466451/1‑140 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            <  1:1351958/140‑1 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            <  1:3177401/140‑1 (MQ=255)

          cAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            >  2:79152/1‑140 (MQ=255)

             aTCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCg                                                                                                                         >  2:2174169/1‑140 (MQ=255)

                  aaCGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATc                                                                                                                               >  1:263420/1‑129 (MQ=255)

                       cGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATc                                                                                                               >  1:2165407/1‑140 (MQ=255)

                        gtgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCa                                                                                                              >  2:913662/1‑140 (MQ=255)

                        gtgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCa                                                                                                              >  2:3124763/1‑140 (MQ=255)

                         tgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCTGTCTTATCGATGCGTGCAGAAATCag                                                                                                             >  2:2924571/1‑140 (MQ=255)

                         tgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGAt                                                                                                                            <  1:2056511/125‑1 (MQ=255)

                         tgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCag                                                                                                             >  2:2676234/1‑140 (MQ=255)

                         tgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCag                                                                                                             >  1:2223286/1‑140 (MQ=255)

                         tgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCag                                                                                                             >  2:3076465/1‑140 (MQ=255)

                         tgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCag                                                                                                             >  2:562427/1‑140 (MQ=255)

                         tgtTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCag                                                                                                             >  2:750024/1‑140 (MQ=255)

                                gTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAgcaagcaa                                                                                                      <  1:466451/140‑1 (MQ=255)

                                gTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAgcaagcaa                                                                                                      <  1:2939693/140‑1 (MQ=255)

                                gTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAgcaagcaa                                                                                                      <  1:1082944/140‑1 (MQ=255)

                                  ttGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCaaaa                                                                                                    <  2:1151642/140‑1 (MQ=255)

                                     gtgtTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAAt                                                                                                 >  1:161885/1‑140 (MQ=255)

                                      tgtTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAAtt                                                                                                >  2:628240/1‑140 (MQ=255)

                                      tgtTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAAtt                                                                                                >  1:2039183/1‑140 (MQ=255)

                                        ttGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTa                                                                                              <  1:3124763/140‑1 (MQ=255)

                                        ttGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTa                                                                                              <  2:161885/140‑1 (MQ=255)

                                          gATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCagc                                                                                                            >  1:379883/1‑124 (MQ=255)

                                          gATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCagc                                                                                                            <  2:379883/124‑1 (MQ=255)

                                          gATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATg                                                                                            <  2:1381545/140‑1 (MQ=255)

                                          gATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATg                                                                                            <  1:3307334/140‑1 (MQ=255)

                                           aTAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTa                                                                                              <  2:2584287/137‑1 (MQ=255)

                                           aTAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATgg                                                                                           <  1:1234314/140‑1 (MQ=255)

                                            tAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGgt                                                                                          <  1:2569061/140‑1 (MQ=255)

                                             aaCGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGgtg                                                                                         <  1:740506/140‑1 (MQ=255)

                                                ggTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGgtgtgt                                                                                      >  2:367062/1‑140 (MQ=255)

                                                  ttACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGttt                                                                                    >  1:2480309/1‑140 (MQ=255)

                                                    aCCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCt                                                                                  >  1:1393906/1‑140 (MQ=255)

                                                    aCCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCt                                                                                  <  2:1249776/140‑1 (MQ=255)

                                                      cTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGt                                                                                <  2:2287024/140‑1 (MQ=255)

                                                      cTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGt                                                                                <  1:2676234/140‑1 (MQ=255)

                                                          cAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGgtg                                                                                         <  2:204234/127‑1 (MQ=255)

                                                          cAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTtat                                                                            >  2:1750804/1‑140 (MQ=255)

                                                            gATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATAc                                                                          <  1:1224985/140‑1 (MQ=255)

                                                             aTAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACt                                                                         <  1:3076465/140‑1 (MQ=255)

                                                                aTCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGa                                                                      <  2:1397405/140‑1 (MQ=255)

                                                                 tCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAg                                                                     <  2:3377567/140‑1 (MQ=255)

                                                                     tttAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCg                                                                 <  1:67094/140‑1 (MQ=255)

                                                                       tAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGcc                                                               <  1:1750804/140‑1 (MQ=255)

                                                                       tAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGcc                                                               >  1:1886889/1‑140 (MQ=255)

                                                                       tAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGcc                                                               >  2:1510117/1‑140 (MQ=255)

                                                                       tAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGcc                                                               <  1:341050/140‑1 (MQ=255)

                                                                         aGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCt                                                             >  1:2131794/1‑140 (MQ=255)

                                                                             gATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGcc                                                               >  1:1920522/1‑134 (MQ=255)

                                                                             gATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGcc                                                               <  2:1920522/134‑1 (MQ=255)

                                                                             gATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGC‑AGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGa                                                        <  2:1208641/140‑1 (MQ=255)

                                                                              aTCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGa                                                        <  1:590766/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  1:2211060/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  2:3358242/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  2:2691740/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  1:3370072/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  2:2350462/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  2:3424366/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  1:6143/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       >  1:1496659/1‑140 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  1:837068/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  1:911849/140‑1 (MQ=255)

                                                                               tctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       >  2:1455469/1‑140 (MQ=255)

                                                                                ctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGc                                                      >  1:2330606/1‑140 (MQ=255)

                                                                                ctcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGc                                                      <  2:1817624/140‑1 (MQ=255)

                                                                                 tcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCt                                                     <  2:2999549/140‑1 (MQ=255)

                                                                                 tcGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCt                                                     <  1:2915892/140‑1 (MQ=255)

                                                                                   gCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAg                                                       <  1:1709863/136‑1 (MQ=255)

                                                                                   gCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCtgt                                                   <  1:1455469/140‑1 (MQ=255)

                                                                                    ccATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCtgtg                                                  <  2:3398599/140‑1 (MQ=255)

                                                                                    ccATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCtgtg                                                  <  2:2015460/140‑1 (MQ=255)

                                                                                              aaTCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGa                                        <  2:1328693/140‑1 (MQ=255)

                                                                                               aTCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGAt                                       >  2:883644/1‑140 (MQ=255)

                                                                                               aTCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGAt                                       >  1:2850603/1‑140 (MQ=255)

                                                                                               aTCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGAt                                       >  2:1678493/1‑140 (MQ=255)

                                                                                                 cAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATgg                                     >  1:37211/1‑140 (MQ=255)

                                                                                                   aGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGgga                                   <  2:2139473/140‑1 (MQ=255)

                                                                                                          ttCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACa                              <  2:2792901/138‑1 (MQ=255)

                                                                                                          ttCCGGATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACa                              >  1:2792901/1‑138 (MQ=255)

                                                                                                               gATCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCt                       >  1:77739/1‑140 (MQ=255)

                                                                                                                aTCCTCTTTCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTGTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTg                      <  2:2562249/140‑1 (MQ=255)

                                                                                                                        tCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATgg              >  2:1911935/1‑140 (MQ=255)

                                                                                                                        tCGCGGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATgg              >  2:416027/1‑140 (MQ=255)

                                                                                                                          gcgGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGaa            <  2:53139/140‑1 (MQ=255)

                                                                                                                          gcgGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGaa            <  2:2219294/140‑1 (MQ=255)

                                                                                                                          gcgGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGaa            <  2:2229389/140‑1 (MQ=255)

                                                                                                                           cgGGAAGAATTTACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAAc           >  2:3193820/1‑140 (MQ=255)

                                                                                                                                    tttACCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATgatgat  <  1:1036206/140‑1 (MQ=255)

AATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGTCTTATCGATGCGTGCAGAAATCAGCAAGCAAAAAATTTATGGTGTGTTTCTGTTTATACTGGAGTTCGCCCTGGTGAGCTGTGTGCACTTGGATGGGAGGACATAGATCTGAAAAATGGAACAATGATGAT  >  NC_000913/1651908‑1652179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`