BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,036,963	(T)_5→4	coding (1190/1359 nt)	hprS ←	sensory histidine kinase HprS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,036,959	0	T	.	100.0%	483.3 / NA	113	coding (1194/1359 nt)	hprS	sensory histidine kinase HprS
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (53/60); total (53/60)

Only 100 of 120 total aligned reads displayed.

AACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTCGAT  >  NC_000913/2036822‑2037094

aaCACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGttt                                                                                                                                       <  2:374854/140‑1 (MQ=255)

aaCACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGttt                                                                                                                                       >  2:40834/1‑140 (MQ=255)

aaCACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGttt                                                                                                                                       >  1:732108/1‑140 (MQ=255)

    caTTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGttttcag                                                                                                                                   >  1:340203/1‑137 (MQ=255)

     aTTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGttttcagg                                                                                                                                  <  2:657716/140‑5 (MQ=255)

     aTTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGttttcagg                                                                                                                                  <  2:77399/140‑5 (MQ=255)

       tATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCt                                                                                                                               >  2:136496/1‑140 (MQ=255)

              aTTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAAt                                                                                                                        >  1:550071/1‑140 (MQ=255)

               ttGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAAtt                                                                                                                       >  2:378890/1‑140 (MQ=255)

                tGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAAttt                                                                                                                      <  1:549251/140‑1 (MQ=255)

                 gagaTAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAAtttt                                                                                                                     <  2:611878/140‑1 (MQ=255)

                    aTAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGt                                                                                                                  >  2:117568/1‑140 (MQ=255)

                    aTAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGt                                                                                                                  >  2:421555/1‑140 (MQ=255)

                     tAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGGCCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGtt                                                                                                                 >  2:1176984/1‑140 (MQ=255)

                        tGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCa                                                                                                              >  2:993112/1‑140 (MQ=255)

                        tGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCa                                                                                                              >  2:388937/1‑140 (MQ=255)

                          aTACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAgg                                                                                                            >  2:633540/1‑140 (MQ=255)

                           tACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAggg                                                                                                           <  1:1313738/140‑1 (MQ=255)

                           tACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAggg                                                                                                           <  1:388937/140‑1 (MQ=255)

                            aCGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGc                                                                                                          >  2:1298988/1‑140 (MQ=255)

                                aGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTGGTTCCAGGGCTAGc                                                                                                      >  2:834309/1‑140 (MQ=255)

                                aGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAggg                                                                                                           >  1:831841/1‑135 (MQ=255)

                                aGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAggg                                                                                                           <  2:831841/135‑1 (MQ=255)

                                aGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGc                                                                                                      >  2:144864/1‑140 (MQ=255)

                                aGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGc                                                                                                      <  1:633540/140‑1 (MQ=255)

                                  cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGa                                                                                                    >  2:1138936/1‑140 (MQ=255)

                                  cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGa                                                                                                    >  1:695317/1‑140 (MQ=255)

                                  cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGACTGGCGa                                                                                                    >  2:426605/1‑140 (MQ=255)

                                    cTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGata                                                                                                  <  1:421555/140‑1 (MQ=255)

                                    cTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGata                                                                                                  >  1:1281580/1‑140 (MQ=255)

                                     ttCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat                                                                                                 <  2:340203/140‑1 (MQ=255)

                                     ttCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat                                                                                                 >  2:1218856/1‑140 (MQ=255)

                                     ttCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat                                                                                                 <  2:695317/140‑1 (MQ=255)

                                     ttCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGACTGGCGatat                                                                                                 <  1:426605/140‑1 (MQ=255)

                                      tCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc                                                                                                <  2:1281580/140‑1 (MQ=255)

                                      tCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc                                                                                                <  1:1081903/140‑1 (MQ=255)

                                       cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCa                                                                                               >  2:987547/1‑140 (MQ=255)

                                       cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCa                                                                                               >  1:697373/1‑140 (MQ=255)

                                       cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAAATATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTc                                                                                                                <  1:376754/123‑1 (MQ=255)

                                          ccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAata                                                                                            >  1:1177518/1‑140 (MQ=255)

                                           cATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAatat                                                                                           <  1:1298988/140‑1 (MQ=255)

                                             tGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTa                                                                                         >  2:377979/1‑140 (MQ=255)

                                             tGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTa                                                                                         >  1:775118/1‑140 (MQ=255)

                                                aaTTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGa                                                                                      <  1:117568/140‑1 (MQ=255)

                                                aaTTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGa                                                                                      <  1:377979/140‑1 (MQ=255)

                                                 atacGGCAATCGCTTTGCCGAAGGAAAGGCGTAGTCCAAGCCCTAGGTAATCGCATGAATTACCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATAAATATTAAGAt                                                                                     <  2:863446/137‑1 (MQ=255)

                                                 aTTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGAt                                                                                     >  1:977804/1‑140 (MQ=255)

                                                 aTTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGAt                                                                                     <  2:385543/140‑1 (MQ=255)

                                                 aTTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGAt                                                                                     <  1:542796/140‑1 (MQ=255)

                                                  ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat                                                                                                 <  2:106684/127‑1 (MQ=255)

                                                  ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat                                                                                                 >  1:106684/1‑127 (MQ=255)

                                                  ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATa                                                                                    >  1:915072/1‑140 (MQ=255)

                                                  ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATa                                                                                    >  1:349585/1‑140 (MQ=255)

                                                    cGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGc                                                                                  >  2:1018634/1‑140 (MQ=255)

                                                       cAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGt                                                                               <  1:997245/140‑1 (MQ=255)

                                                       cAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGt                                                                               <  1:40834/140‑1 (MQ=255)

                                                        aaTCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGtt                                                                              <  2:349585/140‑1 (MQ=255)

                                                           cGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGt                                                                           <  1:834309/140‑1 (MQ=255)

                                                                 gACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAg                                                                     <  2:49323/140‑1 (MQ=255)

                                                                   cTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGaa                                                                   <  1:144864/140‑1 (MQ=255)

                                                                   cTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGaa                                                                   <  2:390553/140‑1 (MQ=255)

                                                                     aaagaaagGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGaaaa                                                                 <  1:1253941/140‑1 (MQ=255)

                                                                     aaagaaagGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGaaaa                                                                 <  1:129612/140‑1 (MQ=255)

                                                                     aaagaaagGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGaaaa                                                                 <  2:114124/140‑1 (MQ=255)

                                                                         aaagGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTgg                                                             <  2:775118/140‑1 (MQ=255)

                                                                          aagGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGt                                                            <  2:1330641/140‑1 (MQ=255)

                                                                            ggCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTta                                                          >  2:661841/1‑140 (MQ=255)

                                                                             gCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTtat                                                         <  1:1018634/140‑1 (MQ=255)

                                                                                  gTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGaa                                                    >  2:192882/1‑140 (MQ=255)

                                                                                       tGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATAcgc                                               >  1:726673/1‑140 (MQ=255)

                                                                                        gACCTAGGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTtat                                                         <  1:593437/129‑1 (MQ=255)

                                                                                        gACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGGAAACTGGTTATATGAATAcgcg                                              >  1:204681/1‑140 (MQ=255)

                                                                                        gACCTACGGAATGACGCGAATTATCTCCCCCCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTtat                                                         >  2:593437/1‑129 (MQ=255)

                                                                                              cGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGAttttt                                        >  1:1027153/1‑140 (MQ=255)

                                                                                              cGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGAttttt                                        >  1:439655/1‑140 (MQ=255)

                                                                                                   tGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTgg                                    <  2:355954/139‑1 (MQ=255)

                                                                                                   tGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTgg                                    >  1:355954/1‑139 (MQ=255)

                                                                                                   tGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGc                                   >  2:35294/1‑140 (MQ=255)

                                                                                                   tGACGCGAATTACCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGc                                   >  2:1100737/1‑140 (MQ=255)

                                                                                                    gACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCg                                  >  2:1234280/1‑140 (MQ=255)

                                                                                                     aCGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGa                                 <  1:1218856/140‑1 (MQ=255)

                                                                                                     aCGCGAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGa                                 >  2:774608/1‑140 (MQ=255)

                                                                                                      cgcgAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGaa                                >  1:1000187/1‑140 (MQ=255)

                                                                                                        cgAATTATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAata                              >  2:195268/1‑140 (MQ=255)

                                                                                                            ttATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTa                          <  2:561130/140‑1 (MQ=255)

                                                                                                            ttATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTa                          <  2:1000187/140‑1 (MQ=255)

                                                                                                            ttATCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTa                          <  2:726673/140‑1 (MQ=255)

                                                                                                              aTCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAAt                        <  2:915072/140‑1 (MQ=255)

                                                                                                              aTCTCCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAAt                        <  1:661841/140‑1 (MQ=255)

                                                                                                                 tcCCCGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGa                                 >  2:730605/1‑128 (MQ=255)

                                                                                                                  ccccGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCa                    <  2:977804/140‑1 (MQ=255)

                                                                                                                    ccGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCAtt                  <  1:195268/140‑1 (MQ=255)

                                                                                                                    ccGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCAtt                  <  2:408570/140‑1 (MQ=255)

                                                                                                                     cGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCAt                   <  1:578881/138‑1 (MQ=255)

                                                                                                                     cGCCAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCAt                   >  2:578881/1‑138 (MQ=255)

                                                                                                                       ccAAAATCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAAc               <  1:192882/140‑1 (MQ=255)

                                                                                                                          aaaTCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAAt            <  1:1138936/140‑1 (MQ=255)

                                                                                                                            aTCTACGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGGAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATaa          <  2:204681/140‑1 (MQ=255)

                                                                                                                                aCGGAAGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGAtt      <  1:1100737/140‑1 (MQ=255)

                                                                                                                                    aaGAG‑TTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTCGAt  <  1:136496/140‑1 (MQ=255)

AACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATGAATACGCGATTTTTCTGGCGAATATCTAATGGCATTAACAATAAGATTCGAT  >  NC_000913/2036822‑2037094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`