BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,545,564	A→G	N157D (AAC→GAC)	fimD →	type I fimbriae usher protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,545,564	0	A	G	100.0%	438.7 / NA	122	N157D (AAC→GAC)	fimD	type I fimbriae usher protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (56/66); total (56/66)

Only 100 of 122 total aligned reads displayed.

CGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGG  >  NC_000913/4545428‑4545699

cgcgcAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGAcc                                                                                                                                      >  2:184958/1‑140 (MQ=255)

 gcgcAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCt                                                                                                                                     >  1:1142585/1‑140 (MQ=255)

 gcgcAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCt                                                                                                                                     >  1:253505/1‑140 (MQ=255)

    cAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGAc                                                                                                                                  <  2:803395/140‑1 (MQ=255)

    cAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGAc                                                                                                                                  <  2:4608/140‑1 (MQ=255)

    cAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGAc                                                                                                                                  <  2:643652/140‑1 (MQ=255)

      aCTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGa                                                                                                                                <  2:446486/140‑1 (MQ=255)

          gCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATccc                                                                                                                            >  2:582061/1‑140 (MQ=255)

          gCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATccc                                                                                                                            <  1:582061/140‑1 (MQ=255)

           ccAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCt                                                                                                                           <  1:1361371/140‑1 (MQ=255)

           ccAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCt                                                                                                                           <  1:783551/140‑1 (MQ=255)

            cAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTc                                                                                                                          <  1:151257/140‑1 (MQ=255)

              gTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAg                                                                                                                        <  2:340013/140‑1 (MQ=255)

               tATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAgg                                                                                                                       >  1:38466/1‑140 (MQ=255)

               tATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAgg                                                                                                                       >  2:879396/1‑140 (MQ=255)

               tATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAgg                                                                                                                       <  2:1249661/140‑1 (MQ=255)

               tATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAgg                                                                                                                       <  1:1360661/140‑1 (MQ=255)

                  ggggCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCAt                                                                                                                    <  1:233453/140‑1 (MQ=255)

                    ggCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCAttt                                                                                                                  >  1:193294/1‑140 (MQ=255)

                     gCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTa                                                                                                                 >  2:81193/1‑140 (MQ=255)

                      cTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTAt                                                                                                                >  2:748107/1‑140 (MQ=255)

                         aaTACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCGGGCAttt                                                                                                                  >  2:199137/1‑135 (MQ=255)

                         aaTACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCAttt                                                                                                                  <  1:699714/135‑1 (MQ=255)

                         aaTACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCAttt                                                                                                                  <  1:199137/135‑1 (MQ=255)

                         aaTACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAg                                                                                                             >  1:110601/1‑140 (MQ=255)

                         aaTACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAg                                                                                                             >  1:133375/1‑140 (MQ=255)

                            aCGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTaa                                                                                                          <  1:81259/140‑1 (MQ=255)

                              ggCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAg                                                                                                                        >  2:270309/1‑124 (MQ=255)

                              ggCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAg                                                                                                                        <  1:270309/124‑1 (MQ=255)

                               gCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcg                                                                                                       >  1:732189/1‑140 (MQ=255)

                                cTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgc                                                                                                      >  2:609603/1‑140 (MQ=255)

                                cTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgc                                                                                                      >  2:399921/1‑140 (MQ=255)

                                cTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgc                                                                                                      <  1:756764/140‑1 (MQ=255)

                                   cTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcg                                                                                                   <  1:879396/140‑1 (MQ=255)

                                   cTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcg                                                                                                   >  1:784432/1‑140 (MQ=255)

                                   cTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcg                                                                                                   >  2:531372/1‑140 (MQ=255)

                                   cTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcg                                                                                                   <  1:720871/140‑1 (MQ=255)

                                   cTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcg                                                                                                   >  1:248994/1‑140 (MQ=255)

                                     gTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcgcg                                                                                                 <  1:363379/140‑1 (MQ=255)

                                        gCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTACCCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTgg                                                                                              <  2:1253190/140‑1 (MQ=255)

                                         ccGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt                                                                                             <  1:377163/140‑1 (MQ=255)

                                         ccGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGt                                                                                             <  1:483613/140‑1 (MQ=255)

                                         ccGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCACTCAGGCATTTATGAGTAATCGCGCGCGTGGt                                                                                             <  2:57777/140‑1 (MQ=255)

                                           ggTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTta                                                                                           <  1:184958/140‑1 (MQ=255)

                                                gAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcgcg                                                                                                 >  2:1048339/1‑129 (MQ=255)

                                                gAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATcgcgcgcg                                                                                                 <  1:1048339/129‑1 (MQ=255)

                                                     tgctgGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTcctcct                                                                                 <  2:237897/140‑1 (MQ=255)

                                                     tgctgGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTcctcct                                                                                 <  1:748107/140‑1 (MQ=255)

                                                     tgctgGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTcctcct                                                                                 >  1:878740/1‑140 (MQ=255)

                                                     tgctgGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTcctcct                                                                                 <  2:384411/140‑1 (MQ=255)

                                                      gctgGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTcctcct                                                                                 >  2:1255659/1‑139 (MQ=255)

                                                      gctgGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTcctcct                                                                                 <  1:1255659/139‑1 (MQ=255)

                                                       ctgGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGa                                                                               >  2:632859/1‑140 (MQ=255)

                                                         ggCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGt                                                                             >  1:406713/1‑140 (MQ=255)

                                                              atgatgCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATgg                                                                        <  2:784432/140‑1 (MQ=255)

                                                               tgatgCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATggg                                                                       >  2:394781/1‑140 (MQ=255)

                                                                 atgCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGAt                                                                     <  2:1142585/140‑1 (MQ=255)

                                                                    ccTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATccc                                                                  <  1:632859/140‑1 (MQ=255)

                                                                        tgtgCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTa                                                              >  2:140546/1‑140 (MQ=255)

                                                                         gtgCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTAt                                                             <  1:609603/140‑1 (MQ=255)

                                                                           gCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTa                                                           >  2:374622/1‑140 (MQ=255)

                                                                             cATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTAt                                                             >  2:360698/1‑136 (MQ=255)

                                                                             cATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAAt                                                         >  2:458772/1‑140 (MQ=255)

                                                                              aTTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATg                                                        <  2:558051/140‑1 (MQ=255)

                                                                               ttAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTACGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGc                                                       >  1:485552/1‑140 (MQ=255)

                                                                                   ccACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGa                                                   <  1:458772/140‑1 (MQ=255)

                                                                                   ccACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGa                                                   <  2:253505/140‑1 (MQ=255)

                                                                                       aaTGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGc                                               >  2:258985/1‑140 (MQ=255)

                                                                                         tGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTAt                                                             <  2:359942/124‑1 (MQ=255)

                                                                                         tGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTAt                                                             >  1:359942/1‑124 (MQ=255)

                                                                                         tGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTc                                             >  1:720040/1‑140 (MQ=255)

                                                                                          ggTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCa                                            >  2:402629/1‑140 (MQ=255)

                                                                                            tCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCt                                              >  2:352490/1‑136 (MQ=255)

                                                                                            tCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCt                                              <  1:352490/136‑1 (MQ=255)

                                                                                            tCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCt                                              >  2:407600/1‑136 (MQ=255)

                                                                                                 gACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATaa                                     >  2:753304/1‑140 (MQ=255)

                                                                                                   cGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAAtt                                   <  1:394781/140‑1 (MQ=255)

                                                                                                   cGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAAtt                                   >  2:799190/1‑140 (MQ=255)

                                                                                                   cGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAAtt                                   >  1:619389/1‑140 (MQ=255)

                                                                                                     cTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTc                                 >  1:779688/1‑140 (MQ=255)

                                                                                                           cgcATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGa                           >  1:194093/1‑140 (MQ=255)

                                                                                                            gcATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGaa                          <  2:878740/140‑1 (MQ=255)

                                                                                                            gcATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGaa                          <  1:264203/140‑1 (MQ=255)

                                                                                                             cATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGaaa                         <  1:531372/140‑1 (MQ=255)

                                                                                                             cATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGaaa                         <  2:1172657/140‑1 (MQ=255)

                                                                                                             cATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGaaa                         >  1:343692/1‑140 (MQ=255)

                                                                                                             cATCTGGATGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGaaa                         <  2:248994/140‑1 (MQ=255)

                                                                                                                    aTGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTa                  <  2:619389/140‑1 (MQ=255)

                                                                                                                    aTGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTa                  <  2:908801/140‑1 (MQ=255)

                                                                                                                    aTGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTa                  <  2:732189/140‑1 (MQ=255)

                                                                                                                    aTGTTGGTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTa                  <  2:779688/140‑1 (MQ=255)

                                                                                                                          gTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGTTTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAAt            >  1:1263695/1‑140 (MQ=255)

                                                                                                                          gTCAGCAGCGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAAt            >  2:641380/1‑140 (MQ=255)

                                                                                                                              gcagcGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGa        <  2:945989/140‑1 (MQ=255)

                                                                                                                                agcGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGAtt      >  1:643200/1‑140 (MQ=255)

                                                                                                                                 gcGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGaa             >  2:210903/1‑132 (MQ=255)

                                                                                                                                  cGACTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTgg    >  1:1349301/1‑140 (MQ=255)

                                                                                                                                    aCTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTa                  <  1:329073/124‑1 (MQ=255)

                                                                                                                                    aCTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTa                  >  2:329073/1‑124 (MQ=255)

                                                                                                                                    aCTGGACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTgggg  >  2:729846/1‑140 (MQ=255)

CGCGCAACTCGCCAGTATGGGGCTGAATACGGCTTCTGTCGCCGGTATGAATCTGCTGGCGGATGATGCCTGTGTGCCATTAACCACAATGGTCCAGGACGCTACTGCGCATCTGGATGTTGGTCAGCAGCGACTGAACCTGACGATCCCTCAGGCATTTATGAGTAATCGCGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGGAAATAGTGTACAGAATCGGATTGGGG  >  NC_000913/4545428‑4545699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`