Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,000,902	T→C	S563P (TCC→CCC)	elfC →	putative fimbrial usher protein ElfC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,000,902	0	T	C	100.0%	248.7 / NA	69	S563P (TCC→CCC)	elfC	putative fimbrial usher protein ElfC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/37);  total (32/37)

ATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATG  >  NC_000913/1000765‑1001036                                                                                                                                          |                                                                                                                                       atatCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTccc                                                                                                                                      >  2:1271986/1‑140 (MQ=255) atatCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTccc                                                                                                                                      <  2:1010482/140‑1 (MQ=255)      tcCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGaa                                                                                                                                 <  2:560981/140‑1 (MQ=255)      tcCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGaa                                                                                                                                 <  2:546822/140‑1 (MQ=255)       cccAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAAc                                                                                                                                <  1:1271986/140‑1 (MQ=255)        ccAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACt                                                                                                                               <  1:1310649/140‑1 (MQ=255)          aGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTAc                                                                                                                             >  1:1052916/1‑140 (MQ=255)          aGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTAc                                                                                                                             <  1:499722/140‑1 (MQ=255)           gCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACa                                                                                                                            >  1:405007/1‑140 (MQ=255)              aTTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTa                                                                                                                         >  2:271013/1‑140 (MQ=255)                tAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAg                                                                                                                       >  1:873837/1‑140 (MQ=255)                 aGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGTTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGt                                                                                                                      >  2:240167/1‑140 (MQ=255)                 aGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGt                                                                                                                      >  2:1261502/1‑140 (MQ=255)                  ggCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTc                                                                                                                     >  1:1342579/1‑140 (MQ=255)                   gCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTcc                                                                                                                    <  2:873837/140‑1 (MQ=255)                   gCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTcc                                                                                                                    <  1:83222/140‑1 (MQ=255)                    cGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTccc                                                                                                                   <  2:872392/140‑1 (MQ=255)                    cGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTccc                                                                                                                   <  1:110752/140‑1 (MQ=255)                     gAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCg                                                                                                                  <  1:723942/140‑1 (MQ=255)                        tACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCCGGAACTACAGTAAGTCCCGTgg                                                                                                               >  1:83065/1‑140 (MQ=255)                         aCGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGTCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGt                                                                                                              <  2:930071/140‑1 (MQ=255)                         aCGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCCGGAACTACAGTAAGTCCCGTGGt                                                                                                              <  2:83065/140‑1 (MQ=255)                             ttCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAAc                                                                                                          >  1:766287/1‑140 (MQ=255)                             ttCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAAc                                                                                                          >  1:447513/1‑140 (MQ=255)                              tCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAAcc                                                                                                         <  2:217818/140‑1 (MQ=255)                                  tttatttaAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGAt                                                                                                     <  1:1261502/140‑1 (MQ=255)                                   ttatttaAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGTTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATg                                                                                                    <  1:240167/140‑1 (MQ=255)                                   ttatttaAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATg                                                                                                    <  2:508094/140‑1 (MQ=255)                                   ttatttaAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATg                                                                                                    <  2:1342579/140‑1 (MQ=255)                                   ttatttaAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATg                                                                                                    <  2:333310/140‑1 (MQ=255)                                   ttatttaAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATg                                                                                                    <  2:766287/140‑1 (MQ=255)                                              gTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGgtg                                                                                         >  2:571372/1‑140 (MQ=255)                                              gTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGgtg                                                                                         >  2:728848/1‑140 (MQ=255)                                              gTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGgtg                                                                                         >  2:378232/1‑140 (MQ=255)                                                      cAAACTTACTGGCATACGGATCTACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGctct                                                                                 >  2:43528/1‑140 (MQ=255)                                                         aCTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTaaa                                                                              >  2:907343/1‑140 (MQ=255)                                                               tGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTc                                                                        >  1:695704/1‑140 (MQ=255)                                                                  cATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCt                                                                     >  1:353854/1‑140 (MQ=255)                                                                   aTACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTg                                                                    >  2:326607/1‑140 (MQ=255)                                                                    tACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTg                                                                    >  2:1005816/1‑139 (MQ=255)                                                                    tACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTg                                                                    <  1:1005816/139‑1 (MQ=255)                                                                        gATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCt                                                               <  1:444534/140‑1 (MQ=255)                                                                         aTCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTc                                                              <  2:954707/140‑1 (MQ=255)                                                                         aTCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTc                                                              >  2:1332562/1‑140 (MQ=255)                                                                          tCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCa                                                             <  1:1323326/140‑1 (MQ=255)                                                                             aCAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATc                                                          <  1:1332562/140‑1 (MQ=255)                                                                              cAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCt                                                         >  1:580979/1‑140 (MQ=255)                                                                                ggATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGt                                                       >  2:907142/1‑140 (MQ=255)                                                                                  aTCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTg                                                     <  1:728848/140‑1 (MQ=255)                                                                                   tCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGc                                                    >  2:170817/1‑140 (MQ=255)                                                                                    cGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCt                                                   <  2:695704/140‑1 (MQ=255)                                                                                     ggCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTc                                                  <  1:159423/140‑1 (MQ=255)                                                                                      gCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTcc                                                 >  2:560093/1‑140 (MQ=255)                                                                                       cTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTccc                                                <  1:326607/140‑1 (MQ=255)                                                                                        tATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTcccc                                               <  1:907343/140‑1 (MQ=255)                                                                                           tACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGa                                            >  2:381870/1‑140 (MQ=255)                                                                                                tttGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAg                                          >  2:744460/1‑137 (MQ=255)                                                                                                tttGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAg                                          <  1:744460/137‑1 (MQ=255)                                                                                                tttGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTaa                                       >  2:1236539/1‑140 (MQ=255)                                                                                                 ttGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAAt                                      >  1:807390/1‑140 (MQ=255)                                                                                                     cTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATa                                  >  1:829939/1‑140 (MQ=255)                                                                                                        caacaCGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAAt                                      >  1:458510/1‑133 (MQ=255)                                                                                                        caacaCGCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAAt                                      <  2:458510/133‑1 (MQ=255)                                                                                                              gCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATAcc                          >  1:511571/1‑139 (MQ=255)                                                                                                              gCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATAcc                          <  2:511571/139‑1 (MQ=255)                                                                                                              gCAAATTAAAGATCTTTCGCTGGGGATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCa                         >  1:980331/1‑140 (MQ=255)                                                                                                                                   ggggATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGa    <  1:338943/140‑1 (MQ=255)                                                                                                                                     ggATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATg  <  2:353854/140‑1 (MQ=255)                                                                                                                                     ggATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATg  <  1:808970/140‑1 (MQ=255)                                                                                                                                     ggATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATg  <  2:580979/140‑1 (MQ=255)                                                                                                                                     ggATTCCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATg  <  1:752029/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                       ATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCTCTAAATTTTTCCCTGCCGCTCAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATG  >  NC_000913/1000765‑1001036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑