Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,073,106	A→G	D523G (GAC→GGC)	flu →	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,073,106	0	A	G	100.0%	254.5 / NA	72	D523G (GAC→GGC)	flu	CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/35);  total (37/35)

GATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAA  >  NC_000913/2072970‑2073241                                                                                                                                         |                                                                                                                                        gATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAg                                                                                                                                      >  1:875718/1‑140 (MQ=255) gATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAg                                                                                                                                      >  1:1012655/1‑140 (MQ=255)          cTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTcac                                                                                                                             >  2:1168048/1‑140 (MQ=255)           tGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTcacc                                                                                                                            <  1:317093/140‑1 (MQ=255)                ggAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGa                                                                                                                       >  1:916703/1‑140 (MQ=255)                  aGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATg                                                                                                                     >  2:867304/1‑140 (MQ=255)                  aGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATg                                                                                                                     >  2:1094990/1‑140 (MQ=255)                  aGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACCGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATg                                                                                                                     >  1:193783/1‑140 (MQ=255)                    gCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGa                                                                                                                       >  2:315192/1‑136 (MQ=255)                    gCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGa                                                                                                                       <  1:315192/136‑1 (MQ=255)                        tctcACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTg                                                                                                               >  1:1342996/1‑140 (MQ=255)                          tcACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCt                                                                                                             >  2:265288/1‑140 (MQ=255)                          tcACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCt                                                                                                             <  2:242464/140‑1 (MQ=255)                               ggTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                                                        <  2:1235900/140‑1 (MQ=255)                                  aaCGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCgg                                                                                                     <  2:1342996/140‑1 (MQ=255)                                  aaCGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCgg                                                                                                     >  2:983858/1‑140 (MQ=255)                                    cGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTa                                                                                                   <  1:867304/140‑1 (MQ=255)                                    cGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTa                                                                                                   <  1:1168048/140‑1 (MQ=255)                                     ggCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTAc                                                                                                  <  2:1007911/140‑1 (MQ=255)                                     ggCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTAc                                                                                                  <  1:317256/140‑1 (MQ=255)                                     ggCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTAc                                                                                                  <  1:565789/140‑1 (MQ=255)                                        aGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCGCGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGc                                                                                               >  2:170811/1‑140 (MQ=255)                                         gCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                                                        >  2:1276187/1‑130 (MQ=255)                                         gCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAgcg                                                                                                        <  1:1276187/130‑1 (MQ=255)                                           gTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACAC‑‑CACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGa                                                                                          <  2:456683/140‑1 (MQ=255)                                               aaaaaTCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAg                                                                                        <  1:1297969/140‑1 (MQ=255)                                                            tGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                                                           <  2:34073/140‑1 (MQ=255)                                                            tGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGgcagca                                                                           <  2:1054762/140‑1 (MQ=255)                                                              gCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACt                                                                         >  1:266732/1‑140 (MQ=255)                                                                acacTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACtgt                                                                       >  2:1172956/1‑140 (MQ=255)                                                                  actcactGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGc                                                                     >  2:1274797/1‑140 (MQ=255)                                                                      actGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGaa                                                                 >  2:294004/1‑140 (MQ=255)                                                                      actGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGaa                                                                 <  1:983858/140‑1 (MQ=255)                                                                        tGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACg                                                               >  2:203475/1‑140 (MQ=255)                                                                        tGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGGCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACg                                                               >  2:1185183/1‑140 (MQ=255)                                                                            aGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGc                                                           >  2:567496/1‑140 (MQ=255)                                                                              cAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCa                                                         >  2:262780/1‑140 (MQ=255)                                                                                acacCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCAtt                                                       <  2:266732/140‑1 (MQ=255)                                                                                  accacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGa                                                     >  2:939743/1‑140 (MQ=255)                                                                                    cacaCTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAcc                                                   <  2:1012655/140‑1 (MQ=255)                                                                                      cacTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAcccc                                                 <  1:1083728/140‑1 (MQ=255)                                                                                      cacTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAcccc                                                 <  2:193783/140‑1 (MQ=255)                                                                                      cacTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGAcccc                                                 >  2:1088852/1‑140 (MQ=255)                                                                                           aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCAc                                               <  2:223488/137‑1 (MQ=255)                                                                                           aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCAc                                               >  1:223488/1‑137 (MQ=255)                                                                                           aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGaa                                            >  2:920656/1‑140 (MQ=255)                                                                                           aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGaa                                            >  2:350517/1‑140 (MQ=255)                                                                                            cccAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAAt                                           >  1:928823/1‑140 (MQ=255)                                                                                            cccAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAAt                                           >  2:983307/1‑140 (MQ=255)                                                                                            cccAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAAt                                           >  1:1319756/1‑140 (MQ=255)                                                                                              cAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGt                                         >  1:698743/1‑140 (MQ=255)                                                                                                gAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCa                                       <  1:1274797/140‑1 (MQ=255)                                                                                                   aGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActc                                    >  1:986906/1‑140 (MQ=255)                                                                                                    gCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCActct                                   <  1:1172956/140‑1 (MQ=255)                                                                                                     ccGTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACtctc                                  >  2:710928/1‑140 (MQ=255)                                                                                                       gTCAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGc                                >  2:1295050/1‑140 (MQ=255)                                                                                                         cAACCTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCt                              <  1:350517/140‑1 (MQ=255)                                                                                                             cTGAATGAAGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCgg                          <  1:265288/140‑1 (MQ=255)                                                                                                              tgaatgaaGGCGCGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                         <  1:170811/140‑1 (MQ=255)                                                                                                              tgaatgaaGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                         <  1:1295050/140‑1 (MQ=255)                                                                                                              tgaatgaaGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                         <  1:262780/140‑1 (MQ=255)                                                                                                              tgaatgaaGGCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                         <  1:920656/140‑1 (MQ=255)                                                                                                                       gCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTgg                >  1:132927/1‑140 (MQ=255)                                                                                                                       gCACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTgg                >  1:1208379/1‑140 (MQ=255)                                                                                                                        cACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa               <  2:928823/140‑1 (MQ=255)                                                                                                                        cACGCTGACGCTGAACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa               <  2:941810/140‑1 (MQ=255)                                                                                                                          cgctgacgctgaACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAat             >  2:1199031/1‑140 (MQ=255)                                                                                                                           gctgacgctgaACGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAata            <  2:1082533/140‑1 (MQ=255)                                                                                                                                  ctgaACGGCAGTACCGTCACCACGGATGTCATTGGTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGa     <  1:203475/140‑1 (MQ=255)                                                                                                                                     aaCGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAat             >  1:132997/1‑129 (MQ=255)                                                                                                                                     aaCGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAat             <  2:132997/129‑1 (MQ=255)                                                                                                                                     aaCGGCAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATaa  <  1:1094990/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                        GATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAA  >  NC_000913/2072970‑2073241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑