| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,757,662 | (T)8→7 | coding (939/957 nt) | yfjH ← | CP4‑57 prophage; protein YfjH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,757,655 | 0 | T | . | 97.2% | 139.8 / ‑1.8 | 36 | coding (946/957 nt) | yfjH | CP4‑57 prophage; protein YfjH |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (18/17); total (19/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 | |||||||||||
TATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGATTATTTAT > NC_000913/2757524‑2757790 | tATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttct > 2:328523/1‑138 (MQ=255)tATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCtttttttct < 2:556913/140‑3 (MQ=255) cgcAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAg > 2:616126/1‑140 (MQ=255) cAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAgcg > 1:57645/1‑140 (MQ=255) tCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCg < 2:628329/140‑1 (MQ=255) tCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGc < 1:328523/140‑1 (MQ=255) gCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCt > 2:668843/1‑140 (MQ=255) ccTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCa < 1:637684/140‑1 (MQ=255) cTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCAt < 2:57645/140‑1 (MQ=255) aCGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTaaa < 1:604747/140‑1 (MQ=255) aTCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGAcc > 1:329063/1‑140 (MQ=255) gTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAtt > 1:136578/1‑140 (MQ=255) gTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAtt > 1:530327/1‑140 (MQ=255) gTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGAtt < 1:668843/140‑1 (MQ=255) aataaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaa > 2:313856/1‑140 (MQ=255) taaataGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTaaaa < 1:425873/140‑1 (MQ=255) aGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTa < 1:479414/140‑1 (MQ=255) gAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt > 1:152163/1‑124 (MQ=255) gAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCAt < 2:152163/124‑1 (MQ=255) gAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTAt > 2:547711/1‑140 (MQ=255) aGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCaaa < 2:599601/140‑1 (MQ=255) aTTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCt < 1:313856/140‑1 (MQ=255) ggCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGAc < 1:682629/140‑1 (MQ=255) gcgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACt < 2:544734/140‑1 (MQ=255) cgcAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTc < 2:136578/140‑1 (MQ=255) cTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCAttgt < 1:616126/140‑1 (MQ=255) tCTATATGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTacac > 1:644415/1‑140 (MQ=255) tataTGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGa > 1:551419/1‑140 (MQ=255) tataTGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGa > 1:298535/1‑140 (MQ=255) atGGCAAGTAGTAATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGatat > 2:127538/1‑140 (MQ=255) gtagtaATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTAt < 2:230211/140‑1 (MQ=255) agtaATTATTTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTAttt > 2:557426/1‑140 (MQ=255) attattTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGat > 2:221429/1‑125 (MQ=255) attattTACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGat < 1:221429/125‑1 (MQ=255) ttACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGattatt > 2:4306/1‑139 (MQ=255) ttACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGattatt < 1:4306/139‑1 (MQ=255) ttACTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGAttattt > 2:599354/1‑140 (MQ=255) aCTTCTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGAttattta > 2:468747/1‑140 (MQ=255) aCTTC‑TTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGAttatttat > 2:187844/1‑140 (MQ=255) | TATGACTGCGCAGTCATCGAGTCTGTGGGGTGTTGCTCCTTTTGCAACGTATCACTTGTCAATAAATAGAAAGTGTAGATGTATTAGGCGCAGCTATTTAGTCTATATGGCAAGTAGTAATTATTTACTTCTTTTTTTTCTACGAACAGCGCTATCGAAAGCTTGTTTTACATCTTCATTTTTTAAAGACCATTGATTTAAAATAGTATCAACCAAAGCATCTTGACTCATTGTTGCTACACGATATTTTTTATTTTGATTATTTAT > NC_000913/2757524‑2757790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |