Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,029,739 | (A)8→9 | coding (231/1191 nt) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,029,731 | 1 | . | A | 97.8% | 149.7 / ‑3.7 | 46 | coding (239/1191 nt) | rlmI | 23S rRNA m(5)C1962 methyltransferase |
Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (19/26); total (20/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.35e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 |
GCACCAGAAAATTACCGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑AAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAGG > NC_000913/1029594‑1029865 | gcaCCAGAAAATTACCGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑aa > 1:131939/1‑140 (MQ=255) gcaCCAGAAAATTACCGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑aa > 1:171802/1‑140 (MQ=255) gcaCCAGAAAATTACCGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑aa > 2:224794/1‑140 (MQ=255) ccAGAAAATTACCGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑aaaaa > 1:435413/1‑140 (MQ=255) ttACCGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑aaaaaaaaagcaa < 2:241889/140‑6 (MQ=255) ccGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGt > 1:31140/1‑140 (MQ=255) aaaCGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGa < 1:71109/140‑1 (MQ=255) aaaCGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGa > 2:275706/1‑140 (MQ=255) gatcgatAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGa > 1:305667/1‑140 (MQ=255) atcgatAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGAc > 1:611226/1‑140 (MQ=255) gatAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCa < 2:378506/140‑1 (MQ=255) gatAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCa < 2:196980/140‑1 (MQ=255) tAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGa < 1:100512/140‑1 (MQ=255) aTACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAAAGTCGATAGACTCAGACgggg > 2:457416/1‑139 (MQ=255) aCCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCa > 1:474736/1‑140 (MQ=255) cccGGCAGGCCATCAGATTCCCCGGAGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCaa < 1:563544/140‑1 (MQ=255) cGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTACAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAAc > 2:232282/1‑140 (MQ=255) ggCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGCGGGG‑AAAAAAAAAAAAAGTCGGTAGACCCAGACGGGGCAAAca > 2:401228/1‑139 (MQ=255) cAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCGTTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCaa > 2:391638/1‑135 (MQ=255) cAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCGTTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCaa < 1:391638/135‑1 (MQ=255) cAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTc > 2:55655/1‑140 (MQ=255) tctcCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAAAGTCCAGACGCGCGccc > 2:230330/1‑140 (MQ=255) ggCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGAtt < 1:55655/140‑1 (MQ=255) ggCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGAtt > 2:190777/1‑140 (MQ=255) gATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGc > 1:205433/1‑140 (MQ=255) aTTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCg < 2:77547/140‑1 (MQ=255) aGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGa > 2:390965/1‑140 (MQ=255) gTCGAGGCCATCTTTTTGCACCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATaa > 1:678370/1‑140 (MQ=255) cTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑AAAAAAAAGCAATGTCGATAGACTCAGACGGGGCCAACGGCCAGACGCGCGCCCGGATTTTCGAAGCTGGCGAATAAACGCCGCGTGCt > 2:618812/1‑140 (MQ=255) ttttGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTa < 2:131939/140‑1 (MQ=255) ttttGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTa < 2:611226/140‑1 (MQ=255) tttGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTaa > 2:498137/1‑140 (MQ=255) gccagccaGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCAtt < 1:275706/140‑1 (MQ=255) gccagTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTcc > 2:550460/1‑140 (MQ=255) ccagTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTccc < 1:401228/140‑1 (MQ=255) gTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCtga < 1:478756/140‑1 (MQ=255) gTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCtga < 2:435413/140‑1 (MQ=255) cACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCtgatg < 1:180580/140‑1 (MQ=255) cACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCtgatg < 1:232282/140‑1 (MQ=255) cACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCtgatg < 2:31140/140‑1 (MQ=255) cACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCtgatg < 1:390965/140‑1 (MQ=255) cGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTgatgat > 2:692554/1‑140 (MQ=255) cGCCATTTTTGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTgatgat < 2:171802/140‑1 (MQ=255) tttGTGCTTGTTGCAAACGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAat > 2:563241/1‑140 (MQ=255) aaaCGGC‑GGGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCAc < 2:205433/140‑1 (MQ=255) ggc‑ggGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAg > 1:207489/1‑140 (MQ=255) ggc‑ggGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAg < 1:498137/140‑1 (MQ=255) gc‑ggGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAgg < 1:283371/140‑1 (MQ=255) gc‑ggGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAgg < 1:550460/140‑1 (MQ=255) gc‑ggGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAgg < 1:190777/140‑1 (MQ=255) gc‑ggGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAgg < 1:563241/140‑1 (MQ=255) gc‑ggGAAAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAgg < 2:678370/140‑1 (MQ=255) | GCACCAGAAAATTACCGAAACGATCGATAGTAATACCCGGCAGGCCATCAGATTCTCCGGCGATTAAACGATAGCTGTCGAGGCCATCTTTTTGCGCCAGCCAGTCACGCCATTTTTGTGCTTGTTGCAAACGGC‑GGG‑AAAAAAAAGCAATGTCGATAGACTCAGACGGGTCAAACGTCCAGACGCGCGCCCGGATTTGCGAAGCTGGCGAATAAGCGCCGCGTGCTAACCATTTTCCCTGATGATCAACAATATCGATGGTTTCACCGAGG > NC_000913/1029594‑1029865 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |