Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,063,627 | G→A | A50V (GCT→GTT) | cbpA ← | curved DNA‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,063,627 | 0 | G | A | 97.0% | 104.3 / ‑4.0 | 33 | A50V (GCT→GTT) | cbpA | curved DNA‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (20/12); total (20/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.94e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 |
CGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTCACGCCCATGATGGCGTAATAA > NC_000913/1063490‑1063761 | cGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACg > 2:484612/1‑140 (MQ=255) aaTCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTCAACACTTCCCAGGCTTCAACGACctct > 1:316122/1‑140 (MQ=255) tCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTCAACACTTCCCAGGCTTCAACGACCTCTGTGaa < 2:316122/140‑1 (MQ=255) gACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATcc > 2:189273/1‑140 (MQ=255) gACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATcc > 1:402585/1‑140 (MQ=255) aCCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCg > 1:391470/1‑140 (MQ=255) cATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTg < 1:214027/140‑1 (MQ=255) tggtggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCt < 1:287291/140‑1 (MQ=255) gAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACAt > 2:62317/1‑140 (MQ=255) ggTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATgg > 2:244977/1‑140 (MQ=255) ggTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATgg > 2:493010/1‑140 (MQ=255) tAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTAt > 1:115424/1‑140 (MQ=255) cGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCggg < 1:244977/140‑1 (MQ=255) ggATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGc < 1:62317/140‑1 (MQ=255) tCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAg < 2:210168/140‑1 (MQ=255) ttGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAgg > 2:425480/1‑140 (MQ=255) caTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCt < 2:402585/140‑1 (MQ=255) cTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGa < 1:293580/140‑1 (MQ=255) cTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGa < 1:32993/140‑1 (MQ=255) aCTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTg > 1:213154/1‑140 (MQ=255) aGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGAt > 1:275088/1‑140 (MQ=255) cgcgACGTTGTTCATCACTTAACACTTCCTAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATcg > 2:532230/1‑140 (MQ=255) cgcgACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATcg > 1:413805/1‑140 (MQ=255) cgcgACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATcg > 1:73079/1‑140 (MQ=255) cgcgACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATcg > 2:37947/1‑140 (MQ=255) gcgACGTTGTTCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATcgt < 1:369386/140‑1 (MQ=255) gttgttCATCACTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATcgtccgtc < 1:493010/140‑1 (MQ=255) catcaCTTAACACTTCCCAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTc < 1:189273/140‑1 (MQ=255) cccAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTCACGCCCATGATGGCg > 1:155973/1‑140 (MQ=255) cccAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTCACGCCCATGATGGCg > 1:71515/1‑140 (MQ=255) cccAGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTCACGCCCATGATGGCg > 1:497696/1‑140 (MQ=255) aGGCTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTCACGCCCATGATGGCGtaa > 1:207750/1‑140 (MQ=255) cTTCAACGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTCACGCCCATGATGGCGtaataa < 1:466353/140‑1 (MQ=255) | CGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTGCTGACATCAGGATGGTATTTGCGGGCAAGTCGACGATAGGCGGTCTTGATTGTCTTGAGATCGTCCGTCGGTTTCACGCCCATGATGGCGTAATAA > NC_000913/1063490‑1063761 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |