Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,277,527 G→A R20H (CGC→CAC)  soxR → DNA‑binding transcriptional dual regulator SoxR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,277,5270GA100.0% 383.2 / NA 107R20H (CGC→CAC) soxRDNA‑binding transcriptional dual regulator SoxR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/60);  total (47/60)

Only 100 of 107 total aligned reads displayed.

CCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCA  >  NC_000913/4277391‑4277659
                                                                                                                                        |                                                                                                                                    
ccTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAg                                                                                                                                   >  2:205436/1‑140 (MQ=255)
ccTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAg                                                                                                                                   >  1:1218546/1‑140 (MQ=255)
 ctctTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGc                                                                                                                                  >  2:791107/1‑140 (MQ=255)
  tctTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCg                                                                                                                                 <  2:777998/140‑1 (MQ=255)
  tctTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCg                                                                                                                                 <  2:522677/140‑1 (MQ=255)
                aGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCg                                                                                                                   >  1:1537034/1‑140 (MQ=255)
                 gTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCgg                                                                                                                  <  2:1548921/140‑1 (MQ=255)
                  ttCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGgc                                                                                                                 >  1:705961/1‑140 (MQ=255)
                  ttCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGgc                                                                                                                 >  2:325225/1‑140 (MQ=255)
                  ttCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGgc                                                                                                                 >  2:1592906/1‑140 (MQ=255)
                  ttCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGgc                                                                                                                 >  2:1522461/1‑140 (MQ=255)
                     gTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCt                                                                                                              <  1:703555/140‑1 (MQ=255)
                     gTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCt                                                                                                              <  1:791107/140‑1 (MQ=255)
                          ttCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCAtt                                                                                                         >  2:1066890/1‑140 (MQ=255)
                              tCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTa                                                                                                     <  1:954482/140‑1 (MQ=255)
                              tCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTa                                                                                                     <  1:1592906/140‑1 (MQ=255)
                               cTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCCttttttt                                                                                                    >  2:1168099/1‑136 (MQ=255)
                                tGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATg                                                                                                   <  1:1168099/140‑1 (MQ=255)
                                 gTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGa                                                                                                  <  1:952397/140‑1 (MQ=255)
                                 gTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGa                                                                                                  <  1:325225/140‑1 (MQ=255)
                                  ttGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGaa                                                                                                 >  2:1588568/1‑140 (MQ=255)
                                   tGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGaaa                                                                                                <  2:1218546/140‑1 (MQ=255)
                                   tGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGaaa                                                                                                >  1:431025/1‑140 (MQ=255)
                                      ggAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTa                                                                                             <  1:1522461/140‑1 (MQ=255)
                                          tataATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAgg                                                                                         >  1:1149689/1‑140 (MQ=255)
                                           ataATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAggg                                                                                        <  2:1389347/140‑1 (MQ=255)
                                           ataATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAggg                                                                                        <  1:330577/140‑1 (MQ=255)
                                           ataATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAggg                                                                                        <  1:675698/140‑1 (MQ=255)
                                           ataATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAggg                                                                                        <  1:396178/140‑1 (MQ=255)
                                           ataATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCCCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAggg                                                                                        <  1:535105/140‑1 (MQ=255)
                                             aaTTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGtt                                                                                      <  2:525954/140‑1 (MQ=255)
                                               ttCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTaaa                                                                                           <  2:511595/133‑1 (MQ=255)
                                               ttCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTaaa                                                                                           >  1:511595/1‑133 (MQ=255)
                                               ttCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGa                                                                                    >  1:140666/1‑140 (MQ=255)
                                               ttCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGa                                                                                    >  2:601500/1‑140 (MQ=255)
                                                tCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGAt                                                                                   <  1:1066890/140‑1 (MQ=255)
                                                tCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGAt                                                                                   <  1:136790/140‑1 (MQ=255)
                                                 ccTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGAtt                                                                                  <  1:557749/140‑1 (MQ=255)
                                                  cTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTa                                                                                 >  1:1430784/1‑140 (MQ=255)
                                                   tCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAc                                                                                <  2:183934/140‑1 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAggg                                                                                        >  2:128426/1‑131 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAggg                                                                                        <  1:128426/131‑1 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGtt                                                                                      <  2:1385438/133‑1 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGtt                                                                                      >  1:1385438/1‑133 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAcc                                                                               >  2:1159529/1‑140 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAcc                                                                               >  1:1614073/1‑140 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAcc                                                                               >  1:317795/1‑140 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAcc                                                                               >  1:1233984/1‑140 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAcc                                                                               >  1:386936/1‑140 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAcc                                                                               >  1:608042/1‑140 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCACATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTACATTTCTATGAAAGTAAAGGGTTGATTAc                                                                                >  1:663899/1‑139 (MQ=255)
                                                    cAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCACATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTACATTTCTATGAAAGTAAAGGGTTGATTAc                                                                                <  2:663899/139‑1 (MQ=255)
                                                    cAAGTTAACTTGAGGCAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGtt                                                                                      <  2:492002/133‑1 (MQ=255)
                                                    cAAGTTAACTTGAGGCAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGtt                                                                                      >  1:492002/1‑133 (MQ=255)
                                                     aaGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCa                                                                              <  2:609822/140‑1 (MQ=255)
                                                       gTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGt                                                                            <  1:720534/140‑1 (MQ=255)
                                                       gTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGt                                                                            <  2:1537034/140‑1 (MQ=255)
                                                          aaCTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAc                                                                                <  1:1212470/133‑1 (MQ=255)
                                                          aaCTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAc                                                                                >  2:1212470/1‑133 (MQ=255)
                                                          aaCTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATc                                                                         <  2:386936/140‑1 (MQ=255)
                                                          aaCTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATc                                                                         >  1:1179631/1‑140 (MQ=255)
                                                             ttGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGt                                                                      <  2:1233984/140‑1 (MQ=255)
                                                               gAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTaa                                                                    <  1:855897/140‑1 (MQ=255)
                                                                aGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAAc                                                                   >  2:78806/1‑140 (MQ=255)
                                                                  gTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAc                                                                                <  2:828984/125‑1 (MQ=255)
                                                                  gTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTAc                                                                                >  1:828984/1‑125 (MQ=255)
                                                                     aaGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCgg                                                              >  1:223744/1‑140 (MQ=255)
                                                                      aGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGc                                                             >  1:1473331/1‑140 (MQ=255)
                                                                      aGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGc                                                             >  1:594824/1‑140 (MQ=255)
                                                                      aGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGGTGATTACCAGTATCCGTAACAGCGGc                                                             >  1:700487/1‑140 (MQ=255)
                                                                               tGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCTGTAACAGCGGCAATCAgcgg                                                    <  1:1588568/140‑1 (MQ=255)
                                                                               tGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAgcgg                                                    <  2:431025/140‑1 (MQ=255)
                                                                               tGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAgcgg                                                    <  2:317795/140‑1 (MQ=255)
                                                                                    aaGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGata                                               <  1:1230414/140‑1 (MQ=255)
                                                                                     aGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGatat                                              >  1:153611/1‑140 (MQ=255)
                                                                                            aCCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                       <  1:78806/140‑1 (MQ=255)
                                                                                            aCCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                       <  1:1536934/140‑1 (MQ=255)
                                                                                            aCCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGGTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                       >  2:1276028/1‑140 (MQ=255)
                                                                                              cccGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGAt                                     <  2:153611/140‑1 (MQ=255)
                                                                                                cGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGAtgt                                   <  1:601500/140‑1 (MQ=255)
                                                                                                 gCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                       >  1:1033757/1‑135 (MQ=255)
                                                                                                 gCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                       <  2:1033757/135‑1 (MQ=255)
                                                                                                 gCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGAtgtg                                  <  2:1430784/140‑1 (MQ=255)
                                                                                                 gCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGAtgtg                                  <  1:125282/140‑1 (MQ=255)
                                                                                                 gCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGAt                                     >  2:46451/1‑137 (MQ=255)
                                                                                                 gCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGAt                                     <  1:46451/137‑1 (MQ=255)
                                                                                                    ttAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                       <  1:1321031/132‑1 (MQ=255)
                                                                                                    ttAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTg                                       >  2:1321031/1‑132 (MQ=255)
                                                                                                      aaaGCGCTGCTAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCCATATAAACGTGATGTGTTGCg                             <  2:594824/140‑1 (MQ=255)
                                                                                                           gctgctAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATg                        <  2:1614073/140‑1 (MQ=255)
                                                                                                             tgctAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCg                             >  1:432519/1‑133 (MQ=255)
                                                                                                               ctAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGc                    >  2:1021571/1‑140 (MQ=255)
                                                                                                                tAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCGATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCa                   <  1:205436/140‑1 (MQ=255)
                                                                                                                tAACCCCCGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCa                   <  2:140666/140‑1 (MQ=255)
                                                                                                                    ccccGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCGTTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTa               >  2:310226/1‑140 (MQ=255)
                                                                                                                     cccGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTAt              <  1:1159529/140‑1 (MQ=255)
                                                                                                                       cGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCg                             <  1:1451359/123‑1 (MQ=255)
                                                                                                                       cGGCGAAGTGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAAGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCg                             >  2:1451359/1‑123 (MQ=255)
                                                                                                                               tGGCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCt    <  2:1179631/140‑1 (MQ=255)
                                                                                                                                 gCGAAACACAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCa  <  2:608042/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
CCTCTTTTCAGTGTTCAGTTCGTTAATTCATCTGTTGGGGAGTATAATTCCTCAAGTTAACTTGAGGTAAAGCGATTTATGGAAAAGAAATTACCCCGCATTAAAGCGCTGCTAACCCCCGGCGAAGTGGCGAAACGCAGCGGTGTGGCGGTATCGGCGCTGCATTTCTATGAAAGTAAAGGGTTGATTACCAGTATCCGTAACAGCGGCAATCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCA  >  NC_000913/4277391‑4277659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑