Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	999,703	T→C	V163A (GTC→GCC)	elfC →	putative fimbrial usher protein ElfC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	999,703	0	T	C	100.0%	315.2 / NA	88	V163A (GTC→GCC)	elfC	putative fimbrial usher protein ElfC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/53);  total (35/53)

TAAACAACTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGT  >  NC_000913/999566‑999835                                                                                                                                          |                                                                                                                                     tAAACAACTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGccc                                                                                                                                    >  1:741984/1‑140 (MQ=255)      aacTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCt                                                                                                                               <  1:114036/140‑1 (MQ=255)      aacTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCt                                                                                                                               <  2:1323076/140‑1 (MQ=255)        cTGGACAAACAAGCGTGTGTGCCATTGGCGGCGCTTATACCGGATGCCAGCGTAACGTTTACTGTGAATAAACTCCGTATCGGAATTTCCGTACCGCAAATCGCCATCAAAAATAATGCCCGTGGTTATGCCCCCCCTGa                                                                                                                             >  2:382769/1‑140 (MQ=255)        cTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGa                                                                                                                             >  1:1395713/1‑140 (MQ=255)        cTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAACCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGa                                                                                                                             >  2:294126/1‑140 (MQ=255)           gACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACg                                                                                                                          >  2:172177/1‑140 (MQ=255)           gACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACg                                                                                                                          <  2:1098779/140‑1 (MQ=255)                acaaGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTggg                                                                                                                     >  2:57666/1‑140 (MQ=255)                   aGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATg                                                                                                                  <  1:1279226/140‑1 (MQ=255)                    gCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGa                                                                                                                 <  2:1400468/140‑1 (MQ=255)                     cGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGaa                                                                                                                >  2:535112/1‑140 (MQ=255)                     cGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGaa                                                                                                                >  1:655105/1‑140 (MQ=255)                     cGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGaa                                                                                                                >  2:1112372/1‑140 (MQ=255)                         tgtgCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGa                                                                                                            >  1:623850/1‑140 (MQ=255)                          gtgCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGAt                                                                                                           >  2:770128/1‑140 (MQ=255)                            gCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCa                                                                                                         >  2:1567007/1‑140 (MQ=255)                             ccATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCaa                                                                                                        <  1:1238677/140‑1 (MQ=255)                              cATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAAc                                                                                                       >  1:144138/1‑140 (MQ=255)                              cATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAAc                                                                                                       >  1:1363058/1‑140 (MQ=255)                               aTTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAAcg                                                                                                      <  1:801817/140‑1 (MQ=255)                                 tGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAAcgcg                                                                                                    >  2:694794/1‑140 (MQ=255)                                 tGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAAcgcg                                                                                                    <  2:741984/140‑1 (MQ=255)                                  ggtggAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCATGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACgcgc                                                                                                   <  2:1243657/137‑1 (MQ=255)                                  ggCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACgcgc                                                                                                   <  2:1363058/140‑1 (MQ=255)                                   gCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTGCCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCt                                                                                                  <  1:1511451/140‑1 (MQ=255)                                   gCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAAcgcg                                                                                                    >  2:647891/1‑138 (MQ=255)                                   gCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAAcgcg                                                                                                    <  1:647891/138‑1 (MQ=255)                                   gCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCt                                                                                                  <  1:770128/140‑1 (MQ=255)                                    cGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTa                                                                                                 <  1:15662/140‑1 (MQ=255)                                     ggAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTAt                                                                                                <  1:535112/140‑1 (MQ=255)                                      gagaTTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTAtt                                                                                               <  1:172177/140‑1 (MQ=255)                                        gaTTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTAc                                                                                             <  1:1112372/140‑1 (MQ=255)                                          ttattCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTg                                                                                           >  2:344367/1‑140 (MQ=255)                                             ttCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGa                                                                                        >  2:502319/1‑140 (MQ=255)                                              tCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGat                                                                                       <  2:623850/140‑1 (MQ=255)                                                   aTGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCg                                                                                  >  2:352049/1‑140 (MQ=255)                                                   aTGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCg                                                                                  >  2:1056907/1‑140 (MQ=255)                                                   aTGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCg                                                                                  >  2:1127318/1‑140 (MQ=255)                                                   aTGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCg                                                                                  >  1:823126/1‑140 (MQ=255)                                                     gCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGtt                                                                                <  1:31644/140‑1 (MQ=255)                                                       cAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTa                                                                              <  2:302476/140‑1 (MQ=255)                                                         gCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGc                                                                            <  2:422360/140‑1 (MQ=255)                                                         gCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGc                                                                            <  2:411864/140‑1 (MQ=255)                                                         gCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGc                                                                            <  2:1395713/140‑1 (MQ=255)                                                         gCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGc                                                                            <  1:502319/140‑1 (MQ=255)                                                         gCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGc                                                                            <  1:344367/140‑1 (MQ=255)                                                         gCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGc                                                                            <  2:196/140‑1 (MQ=255)                                                             aaCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCgggg                                                                        >  2:294604/1‑140 (MQ=255)                                                              aCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGc                                                                       <  1:694794/140‑1 (MQ=255)                                                              aCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGc                                                                       <  2:1373036/140‑1 (MQ=255)                                                              aCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGc                                                                       <  1:352049/140‑1 (MQ=255)                                                              aCGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGc                                                                       <  1:1127318/140‑1 (MQ=255)                                                                gTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTa                                                                     <  1:1091112/140‑1 (MQ=255)                                                                gTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTa                                                                     <  2:899787/140‑1 (MQ=255)                                                                 tttAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTaa                                                                    <  2:843391/140‑1 (MQ=255)                                                                   tAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACa                                                                  <  2:823126/140‑1 (MQ=255)                                                                   tAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACa                                                                  <  1:57666/140‑1 (MQ=255)                                                                   tAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAACCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACa                                                                  <  1:294126/140‑1 (MQ=255)                                                                          aaTAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGAAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCa                                                           >  2:1023274/1‑140 (MQ=255)                                                                                 tCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATagcagc                                                    <  2:1478775/140‑1 (MQ=255)                                                                                  ccGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAgcg                                                   >  1:881954/1‑140 (MQ=255)                                                                                   cGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAgcgc                                                  >  1:903856/1‑140 (MQ=255)                                                                                   cGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAgcgc                                                  <  1:294604/140‑1 (MQ=255)                                                                                    gTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa                                                 >  2:649979/1‑140 (MQ=255)                                                                                    gTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa                                                 >  2:26818/1‑140 (MQ=255)                                                                                    gTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa                                                 <  1:73795/140‑1 (MQ=255)                                                                                     tCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa                                                 >  2:632189/1‑139 (MQ=255)                                                                                     tCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCa                                                 <  1:632189/139‑1 (MQ=255)                                                                                     tCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAg                                                >  1:965839/1‑140 (MQ=255)                                                                                      cTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGa                                               <  2:1424549/140‑1 (MQ=255)                                                                                      cTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGa                                               >  2:1285554/1‑140 (MQ=255)                                                                                       tGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGAc                                              <  2:881954/140‑1 (MQ=255)                                                                                                   tACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGc                                  <  1:943154/140‑1 (MQ=255)                                                                                                     ccGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGa                                <  1:1123987/140‑1 (MQ=255)                                                                                                        cAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAg                             >  2:697382/1‑140 (MQ=255)                                                                                                        cAAATCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATACATAGCAGCGCAGACAGTGATTCTGGCGACAg                             >  1:304343/1‑140 (MQ=255)                                                                                                           aTCGCCATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTa                          <  1:1023274/140‑1 (MQ=255)                                                                                                               ccATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTAtttt                      >  2:921050/1‑140 (MQ=255)                                                                                                                cATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTc                     <  2:144138/140‑1 (MQ=255)                                                                                                                cATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTc                     <  1:649979/140‑1 (MQ=255)                                                                                                                cATCAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTc                     <  1:147281/140‑1 (MQ=255)                                                                                                                   cAAAAGTAATGCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGa                  <  1:1056907/140‑1 (MQ=255)                                                                                                                             gCCCGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAg        <  1:697382/140‑1 (MQ=255)                                                                                                                                cGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTgg     >  2:1219019/1‑140 (MQ=255)                                                                                                                                cGTGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTgg     >  2:118188/1‑140 (MQ=255)                                                                                                                                  tGGTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCg   <  1:997937/140‑1 (MQ=255)                                                                                                                                   ggTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTa             >  2:1412334/1‑129 (MQ=255)                                                                                                                                   ggTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTa             <  1:1412334/129‑1 (MQ=255)                                                                                                                                   ggTTATGCCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGt  <  1:1219019/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                     TAAACAACTGGACAAACAAGCGTGTGTGCCATTGGCGGAGATTATTCCGGATGCCAGCGTAACGTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAATGCCCGTGGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCGTTTAGCGGGGCTAACAGTATTCATAGCAGCGCAGACAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGT  >  NC_000913/999566‑999835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑