Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,000,776 C→T Q521* (CAA→TAA)  elfC → putative fimbrial usher protein ElfC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,000,7760CT100.0% 483.2 / NA 134Q521* (CAA→TAA) elfCputative fimbrial usher protein ElfC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (73/61);  total (73/61)

Only 100 of 134 total aligned reads displayed.

CCTTTCCGACACCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAACT  >  NC_000913/1000640‑1000911
                                                                                                                                        |                                                                                                                                       
ccTTTCCGACACCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAAt                                                                                                                                      <  2:706346/140‑1 (MQ=255)
  tttCCGACACCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTa                                                                                                                                    >  1:1465095/1‑140 (MQ=255)
   ttCCGACACCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAg                                                                                                                                   >  2:1269815/1‑140 (MQ=255)
    tCCGACACCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAgg                                                                                                                                  >  1:1626883/1‑140 (MQ=255)
     ccGACACCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGc                                                                                                                                 <  1:1269815/140‑1 (MQ=255)
          acCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTa                                                                                                                            >  1:1086703/1‑140 (MQ=255)
            cATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACg                                                                                                                          >  2:639919/1‑140 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  1:738068/1‑140 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  1:777808/1‑140 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  1:972180/1‑140 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  2:1254725/1‑140 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  2:155275/1‑140 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  1:1437210/1‑140 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        <  2:169575/140‑1 (MQ=255)
              tGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  2:23026/1‑140 (MQ=255)
                 ataAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCg                                                                                                                     <  1:486272/140‑1 (MQ=255)
                  taAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCACCCAGTAATTAGGCGAGTACGGTTCGt                                                                                                                    >  1:880835/1‑140 (MQ=255)
                    aaCATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGttt                                                                                                                  >  1:1262339/1‑140 (MQ=255)
                     aCATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATGACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGtttt                                                                                                                 >  2:1511288/1‑140 (MQ=255)
                       atatGCATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttat                                                                                                               <  2:1437210/140‑1 (MQ=255)
                        tatGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttatt                                                                                                              >  1:1571466/1‑140 (MQ=255)
                         atggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGttt                                                                                                                  >  2:187173/1‑135 (MQ=255)
                         atggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattt                                                                                                             <  1:1234706/140‑1 (MQ=255)
                         atggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattt                                                                                                             >  2:1357185/1‑140 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTa                                                                                                                            <  2:1178489/124‑1 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        <  2:156698/128‑1 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGt                                                                                                                        >  1:156698/1‑128 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattta                                                                                                            >  1:988818/1‑140 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattta                                                                                                            >  2:1243624/1‑140 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattta                                                                                                            >  2:1389505/1‑140 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattta                                                                                                            >  2:834191/1‑140 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattta                                                                                                            >  2:945908/1‑140 (MQ=255)
                          tggatggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttattta                                                                                                            >  1:224552/1‑140 (MQ=255)
                             atggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGt                                                                                                         >  1:1078600/1‑140 (MQ=255)
                              tggCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTtttatt                                                                                                              <  2:895872/134‑1 (MQ=255)
                                gCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGt                                                                                                      >  2:762639/1‑140 (MQ=255)
                                gCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGt                                                                                                      >  2:690879/1‑140 (MQ=255)
                                gCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGt                                                                                                      <  2:130151/140‑1 (MQ=255)
                                 cTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTa                                                                                                     <  2:656460/140‑1 (MQ=255)
                                  tACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAg                                                                                                    >  2:751026/1‑140 (MQ=255)
                                        tttAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCa                                                                                              <  2:915623/140‑1 (MQ=255)
                                        tttAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCa                                                                                              <  2:601495/140‑1 (MQ=255)
                                            aTGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACt                                                                                          <  1:491782/140‑1 (MQ=255)
                                            aTGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACt                                                                                          <  2:1265010/140‑1 (MQ=255)
                                                 ggTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTg                                                                                     >  2:589052/1‑140 (MQ=255)
                                                    gatgatgaAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCa                                                                                  <  1:1511288/140‑1 (MQ=255)
                                                      tgatgaAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATa                                                                                <  1:1389505/140‑1 (MQ=255)
                                                         tgaAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACgg                                                                             <  1:751026/140‑1 (MQ=255)
                                                         tgaAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACgg                                                                             <  1:121427/140‑1 (MQ=255)
                                                         tgaAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACgg                                                                             <  2:224552/140‑1 (MQ=255)
                                                          gaAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGa                                                                            >  1:432047/1‑140 (MQ=255)
                                                          gaAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGa                                                                            >  1:62972/1‑140 (MQ=255)
                                                              aTACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCaa                                                                        <  1:690879/140‑1 (MQ=255)
                                                              aTACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCaa                                                                        <  2:62972/140‑1 (MQ=255)
                                                              aTACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCaa                                                                        <  1:762639/140‑1 (MQ=255)
                                                               tACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAAc                                                                       >  2:371440/1‑140 (MQ=255)
                                                                aCGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACa                                                                      >  2:777508/1‑140 (MQ=255)
                                                                  gCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCa                                                                         >  1:758192/1‑135 (MQ=255)
                                                                  gCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAgg                                                                    >  1:1096609/1‑140 (MQ=255)
                                                                  gCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAgg                                                                    >  1:1576260/1‑140 (MQ=255)
                                                                   ccGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGa                                                                   <  1:371440/140‑1 (MQ=255)
                                                                   ccGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGa                                                                   <  1:1296632/140‑1 (MQ=255)
                                                                   ccGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGa                                                                   <  2:1571466/140‑1 (MQ=255)
                                                                   ccGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGa                                                                   <  1:833950/140‑1 (MQ=255)
                                                                       tgtgGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCgg                                                               <  2:1014187/140‑1 (MQ=255)
                                                                        gtgGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATAc                                                                               >  2:520325/1‑123 (MQ=255)
                                                                        gtgGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATAc                                                                               <  1:520325/123‑1 (MQ=255)
                                                                           gTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGc                                                              >  2:602153/1‑137 (MQ=255)
                                                                           gTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGc                                                              <  1:602153/137‑1 (MQ=255)
                                                                           gTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTAt                                                           <  1:834191/140‑1 (MQ=255)
                                                                                 ttattaCAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGt                                                     <  1:589052/140‑1 (MQ=255)
                                                                                   attaCAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGttt                                                   <  1:722468/140‑1 (MQ=255)
                                                                                          tttGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTa                                                         <  1:407758/127‑1 (MQ=255)
                                                                                          tttGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTa                                                         >  2:407758/1‑127 (MQ=255)
                                                                                            tGTTTTACACCAAACGTGGCAAACTGCAGGCCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTacaac                                          >  2:756731/1‑140 (MQ=255)
                                                                                              ttttACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAacac                                        <  1:1334384/140‑1 (MQ=255)
                                                                                              ttttACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAacac                                        >  1:675260/1‑140 (MQ=255)
                                                                                               tttACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACg                                       <  1:1357185/140‑1 (MQ=255)
                                                                                                 tACACCAAACGTGGCAAACTGCAGGTCAATATCACCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCa                                     <  2:880835/140‑1 (MQ=255)
                                                                                                  acacCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCaa                                    >  1:171850/1‑140 (MQ=255)
                                                                                                    acCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAAt                                  <  2:702545/140‑1 (MQ=255)
                                                                                                      cAAACGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTa                                >  2:1322234/1‑140 (MQ=255)
                                                                                                        aaCGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAAt                                  <  2:124011/136‑1 (MQ=255)
                                                                                                        aaCGTGGCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAAt                                  >  1:124011/1‑136 (MQ=255)
                                                                                                             ggCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCt                         >  1:437014/1‑140 (MQ=255)
                                                                                                             ggCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCt                         >  2:1314600/1‑140 (MQ=255)
                                                                                                              gCAAACTGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCtt                        >  2:335908/1‑140 (MQ=255)
                                                                                                                    tGCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTg                  <  2:755213/140‑1 (MQ=255)
                                                                                                                     gCAGGTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGc                    >  1:672490/1‑137 (MQ=255)
                                                                                                                        ggTCAATATCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGa              <  2:1465095/140‑1 (MQ=255)
                                                                                                                             atatCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTcc         <  2:437014/140‑1 (MQ=255)
                                                                                                                              tatCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCt        >  1:179301/1‑140 (MQ=255)
                                                                                                                              tatCTCCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCt        >  2:1378386/1‑140 (MQ=255)
                                                                                                                                tctcCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTgg      <  2:1626883/140‑1 (MQ=255)
                                                                                                                                  tcCCAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGaa    <  1:335908/140‑1 (MQ=255)
                                                                                                                                   cccAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAAc   >  2:503988/1‑140 (MQ=255)
                                                                                                                                   cccAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAAc   >  2:1181128/1‑140 (MQ=255)
                                                                                                                                   cccAGTAATTAGGCGAGTACGGTTAGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAAc   >  2:1275629/1‑140 (MQ=255)
                                                                                                                                    ccAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACATTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAACt  <  2:374368/140‑1 (MQ=255)
                                                                                                                                    ccAGTAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAACt  >  2:780041/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CCTTTCCGACACCATGTATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTTTTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCCAGCAAACTTACTGGCATACGGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTTTCGCTGGGGATTTCCTGGAACT  >  NC_000913/1000640‑1000911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑