BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,650,397	A→G	pseudogene (320/921 nt)	ydfE →	Qin prophage; protein YdfE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,650,397	0	A	G	100.0%	414.1 / NA	116	pseudogene (320/921 nt)	ydfE	Qin prophage; protein YdfE
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (57/59); total (57/59)

Only 100 of 117 total aligned reads displayed.

ATAAACCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGACAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAA  >  NC_000913/1650265‑1650533

aTAAACCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTg                                                                                                                                   <  2:1620165/140‑1 (MQ=255)

aTAAACCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTg                                                                                                                                   <  2:1139344/140‑1 (MQ=255)

aTAAACCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTg                                                                                                                                   <  2:896042/140‑1 (MQ=255)

  aaaCCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGc                                                                                                                                 <  2:1543687/140‑1 (MQ=255)

  aaaCCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCATCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGc                                                                                                                                 <  2:1123844/140‑1 (MQ=255)

       tGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTg                                                                                                                            <  2:1372195/140‑1 (MQ=255)

        ggCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGc                                                                                                                                 >  1:1351855/1‑134 (MQ=255)

         gCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGaa                                                                                                                          >  1:322213/1‑140 (MQ=255)

         gCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGaa                                                                                                                          >  1:1177180/1‑140 (MQ=255)

          cATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGccc                                                                                                                               <  1:102121/134‑1 (MQ=255)

          cATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGccc                                                                                                                               >  2:102121/1‑134 (MQ=255)

              ccccGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACa                                                                                                                     >  2:88279/1‑140 (MQ=255)

                   ccctgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACg                                                                                                                >  1:1231996/1‑140 (MQ=255)

                   ccctgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACg                                                                                                                >  2:220397/1‑140 (MQ=255)

                   ccctgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACg                                                                                                                >  1:955331/1‑140 (MQ=255)

                   ccctgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACg                                                                                                                >  1:72608/1‑140 (MQ=255)

                   ccctgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACg                                                                                                                <  2:322213/140‑1 (MQ=255)

                   ccctgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACg                                                                                                                >  1:522586/1‑140 (MQ=255)

                    cctgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGc                                                                                                               >  1:1270157/1‑140 (MQ=255)

                      tgccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCCGAAGTACAGAACGCTg                                                                                                             <  1:915633/140‑1 (MQ=255)

                        ccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTc                                                                                                           >  1:518351/1‑140 (MQ=255)

                        ccctCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGAACAGAACGCTGTc                                                                                                           >  1:998224/1‑140 (MQ=255)

                            cGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATgg                                                                                                       >  1:1364937/1‑140 (MQ=255)

                             gATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGaa                                                                                                                  <  1:731103/128‑1 (MQ=255)

                             gATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGt                                                                                                      >  1:1381056/1‑140 (MQ=255)

                                   tGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGtt                                                                                                >  2:1268455/1‑140 (MQ=255)

                                    gggATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTc                                                                                               >  2:1337576/1‑140 (MQ=255)

                                      gATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGa                                                                                             <  2:1364937/140‑1 (MQ=255)

                                      gATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGa                                                                                             <  2:1381056/140‑1 (MQ=255)

                                      gATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGa                                                                                             <  2:541464/140‑1 (MQ=255)

                                       aTGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGac                                                                                            >  1:701781/1‑140 (MQ=255)

                                         gCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGacac                                                                                          >  2:246060/1‑140 (MQ=255)

                                         gCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGacac                                                                                          >  2:616479/1‑140 (MQ=255)

                                                atatGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGaa                                                                                   <  2:955331/140‑1 (MQ=255)

                                                  atGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGaca                                                                                           >  2:1130337/1‑130 (MQ=255)

                                                    gCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACa                                                                               >  2:470187/1‑140 (MQ=255)

                                                     cAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACAtgtg                                                                                     >  2:304162/1‑133 (MQ=255)

                                                     cAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACAt                                                                              <  2:449802/140‑1 (MQ=255)

                                                      aGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATc                                                                             <  2:1270157/140‑1 (MQ=255)

                                                       ggAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAGCGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCa                                                                            >  2:1300252/1‑140 (MQ=255)

                                                       ggAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCa                                                                            >  1:1373546/1‑140 (MQ=255)

                                                       ggAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCa                                                                            >  2:1609440/1‑140 (MQ=255)

                                                       ggAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCa                                                                            >  1:293851/1‑140 (MQ=255)

                                                       ggAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCa                                                                            >  1:247398/1‑140 (MQ=255)

                                                        gAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCAc                                                                           <  1:470187/140‑1 (MQ=255)

                                                        gAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCAc                                                                           >  2:1097826/1‑140 (MQ=255)

                                                        gAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCAc                                                                           >  2:671210/1‑140 (MQ=255)

                                                          aaaCCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCg                                                                         >  1:520486/1‑140 (MQ=255)

                                                          aaaCCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCg                                                                         >  1:1391028/1‑140 (MQ=255)

                                                          aaaCCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCg                                                                         <  2:72608/140‑1 (MQ=255)

                                                           aaCCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGt                                                                        <  1:1079456/140‑1 (MQ=255)

                                                             ccGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTg                                                                      >  2:1371569/1‑140 (MQ=255)

                                                             ccGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTg                                                                      <  2:1373546/140‑1 (MQ=255)

                                                             ccGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTg                                                                      >  1:1145244/1‑140 (MQ=255)

                                                             ccGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTg                                                                      <  1:1097826/140‑1 (MQ=255)

                                                               gCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGat                                                                    <  2:1145244/140‑1 (MQ=255)

                                                               gCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGat                                                                    <  1:1007107/140‑1 (MQ=255)

                                                               gCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGat                                                                    <  2:887896/140‑1 (MQ=255)

                                                               gCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGat                                                                    <  2:617109/140‑1 (MQ=255)

                                                               gCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGat                                                                    <  1:799362/140‑1 (MQ=255)

                                                               gCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGat                                                                    <  2:518351/140‑1 (MQ=255)

                                                                cTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGata                                                                   <  2:247398/140‑1 (MQ=255)

                                                                        aggagTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGttatt                                                           >  1:69824/1‑140 (MQ=255)

                                                                          gagTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAg                                                         <  2:1168518/140‑1 (MQ=255)

                                                                          gagTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAg                                                         <  2:69824/140‑1 (MQ=255)

                                                                            gTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAgcg                                                       <  1:246060/140‑1 (MQ=255)

                                                                             tCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAgcgc                                                      <  2:493395/140‑1 (MQ=255)

                                                                             tCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAgcgc                                                      <  1:1337576/140‑1 (MQ=255)

                                                                             tCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAgcgc                                                      >  1:740343/1‑140 (MQ=255)

                                                                              cTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGca                                                     >  1:575319/1‑140 (MQ=255)

                                                                               tGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGcac                                                    <  1:220397/140‑1 (MQ=255)

                                                                               tGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGcac                                                    >  1:1449672/1‑140 (MQ=255)

                                                                               tGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGcac                                                    >  2:243965/1‑140 (MQ=255)

                                                                                  ttcttTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAgg                                                 >  2:1326795/1‑140 (MQ=255)

                                                                                        tGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAAttgt                                           <  1:111262/140‑1 (MQ=255)

                                                                                          tCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAAttgttg                                         <  1:616479/140‑1 (MQ=255)

                                                                                           cccGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGc                                        <  2:1542490/140‑1 (MQ=255)

                                                                                             cGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAg                                      <  1:1326795/140‑1 (MQ=255)

                                                                                               gTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAGCGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGa                                    <  1:1300252/140‑1 (MQ=255)

                                                                                               gTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACGTGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGa                                    <  1:3430/140‑1 (MQ=255)

                                                                                                  gagaCTGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTAAAGTCCAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACAACACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGa                                 <  1:1450482/140‑1 (MQ=255)

                                                                                                       tGAATCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATgg                            <  1:88279/140‑1 (MQ=255)

                                                                                                         aaTCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCa                          >  1:566147/1‑140 (MQ=255)

                                                                                                         aaTCCGATCCGATGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCa                          >  1:264577/1‑140 (MQ=255)

                                                                                                           tccgatccgaTGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAAttgttg                                         >  2:810885/1‑123 (MQ=255)

                                                                                                           tccgatccgaTGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAAttgttg                                         <  1:810885/123‑1 (MQ=255)

                                                                                                             cgatccgatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACAt                      <  2:1231996/140‑1 (MQ=255)

                                                                                                             cgatccgatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACAt                      <  2:522586/140‑1 (MQ=255)

                                                                                                               atccgatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGa                                    <  2:200602/124‑1 (MQ=255)

                                                                                                               atccgatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGa                                    >  1:200602/1‑124 (MQ=255)

                                                                                                                 ccgatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGa                  <  2:701825/140‑1 (MQ=255)

                                                                                                                   gatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACg                <  1:1174952/140‑1 (MQ=255)

                                                                                                                   gatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACg                >  1:1224867/1‑140 (MQ=255)

                                                                                                                   gatGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGATATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGAcc                >  1:1001312/1‑139 (MQ=255)

                                                                                                                     tGAACGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAAGATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGa              >  2:1004139/1‑140 (MQ=255)

                                                                                                                       aaCGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACa            <  1:671210/140‑1 (MQ=255)

                                                                                                                       aaCGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACa            <  2:1449672/140‑1 (MQ=255)

                                                                                                                        aCGTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACat           <  2:264577/140‑1 (MQ=255)

                                                                                                                          gTCACTTTTGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACatat         >  1:1180433/1‑140 (MQ=255)

                                                                                                                                 ttGGCAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGaa  <  1:1439933/140‑1 (MQ=255)

ATAAACCTGGCATACCCCGCCCTGCCCTCGATTCATGGGATGCTGAATATATGCAGGAAAACCGCTGGGATGAGGAGTCTGCTTCTTTTGTCCCGGTTGAGACTGAATCCGATCCGATGAACGTCACTTTTGACAAGCTGGCCCCTGAAGTACAGAACGCTGTCATGGTTAAGTTCGACACATGTGAAAACATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAA  >  NC_000913/1650265‑1650533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`