Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	271,774	A→G	pseudogene (11/427 nt)	insN →	CP4‑6 prophage; IS911A regulator fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	271,774	0	A	G	100.0%	256.5 / NA	72	pseudogene (11/427 nt)	insN	CP4‑6 prophage; IS911A regulator fragment
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/33);  total (39/33)

TCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGAC  >  NC_000913/271643‑271907                                                                                                                                    |                                                                                                                                      tCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGAc                                                                                                                               >  2:504567/1‑140 (MQ=255)  cAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACt                                                                                                                              <  1:819908/140‑1 (MQ=255)    aCATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAg                                                                                                                                 >  2:700416/1‑135 (MQ=255)    aCATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAg                                                                                                                                 <  1:700416/135‑1 (MQ=255)    aCATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTcc                                                                                                                            >  2:81060/1‑140 (MQ=255)    aCATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTcc                                                                                                                            <  1:504567/140‑1 (MQ=255)     cATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTccc                                                                                                                           >  1:805931/1‑140 (MQ=255)      aTGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCt                                                                                                                          >  1:267667/1‑140 (MQ=255)      aTGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCt                                                                                                                          >  1:835761/1‑140 (MQ=255)      aTGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCt                                                                                                                          >  2:736085/1‑140 (MQ=255)        gAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGa                                                                                                                        >  2:498735/1‑140 (MQ=255)        gAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGa                                                                                                                        >  1:692571/1‑140 (MQ=255)         aaCTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGaa                                                                                                                       <  2:267667/140‑1 (MQ=255)         aaCTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGaa                                                                                                                       <  2:336668/140‑1 (MQ=255)         aaCTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTAGTGTCAGACTCCCTGaa                                                                                                                       >  1:554386/1‑140 (MQ=255)          aCTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAAc                                                                                                                      >  1:391622/1‑140 (MQ=255)           cTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTGAGACTCCCTGaa                                                                                                                       >  2:537805/1‑138 (MQ=255)           cTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTGAGACTCCCTGaa                                                                                                                       <  1:537805/138‑1 (MQ=255)                tCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTtct                                                                                                                >  1:794471/1‑140 (MQ=255)                    gTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAg                                                                                                                    <  1:804106/132‑1 (MQ=255)                    gTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGAt                                                                                                            >  2:818826/1‑140 (MQ=255)                    gTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCGACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAg                                                                                                                    >  2:804106/1‑132 (MQ=255)                      tgctgcTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATaa                                                                                                          <  2:306576/140‑1 (MQ=255)                      tgctgcTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATaa                                                                                                          <  2:219914/140‑1 (MQ=255)                        ctgctCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGaa                                                                                                                       >  2:486223/1‑125 (MQ=255)                        ctgctCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGaa                                                                                                                       <  1:486223/125‑1 (MQ=255)                        ctactCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATc                                                                                                        >  2:639426/4‑140 (MQ=255)                                  aaaCAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCa                                                                                              <  2:541055/140‑1 (MQ=255)                                       acaGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGgcg                                                                                         <  1:818826/140‑1 (MQ=255)                                        caGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGgcgc                                                                                        >  1:336365/1‑140 (MQ=255)                                          gACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCCGGAAACTCAGGGCGCGt                                                                                      >  2:493104/1‑140 (MQ=255)                                           aCCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGtt                                                                                     >  1:237019/1‑140 (MQ=255)                                               agaAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATcc                                                                                 >  1:188639/1‑140 (MQ=255)                                                     acacTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGc                                                                           <  2:794471/140‑1 (MQ=255)                                                     acacTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGc                                                                           <  1:639426/140‑1 (MQ=255)                                                         tGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCAct                                                                       <  1:806060/140‑1 (MQ=255)                                                              ttCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCt                                                                                >  1:405219/1‑126 (MQ=255)                                                              ttCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCt                                                                                <  2:405219/126‑1 (MQ=255)                                                                  aaaCACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCCGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCAt                                                              <  1:493104/140‑1 (MQ=255)                                                                   aaCACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCAtg                                                             >  2:159534/1‑140 (MQ=255)                                                                    acacCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTAGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCAtgt                                                            <  2:554386/140‑1 (MQ=255)                                                                       ccGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGtt                                                         <  1:81060/140‑1 (MQ=255)                                                                       ccGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGtt                                                         >  1:316466/1‑140 (MQ=255)                                                                        cGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTc                                                        >  2:194171/1‑140 (MQ=255)                                                                        cGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTc                                                        >  2:511723/1‑140 (MQ=255)                                                                        cGAAAGAGATAATTGAAAGGGGTGTTGCATCGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTc                                                        >  2:601341/1‑140 (MQ=255)                                                                          aaaGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCgg                                                      >  1:754307/1‑140 (MQ=255)                                                                            agagATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCgggg                                                    <  2:391622/140‑1 (MQ=255)                                                                             gagaTAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGt                                                   >  1:83579/1‑140 (MQ=255)                                                                               gaTAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTc                                                 <  2:754307/140‑1 (MQ=255)                                                                                  aaTTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCgggg                                                    >  1:50017/1‑134 (MQ=255)                                                                                  aaTTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCgggg                                                    <  2:50017/134‑1 (MQ=255)                                                                                    ttGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCgc                                            <  2:835761/140‑1 (MQ=255)                                                                                      gAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCgcag                                          <  1:159534/140‑1 (MQ=255)                                                                                      gAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCgcag                                          <  2:188639/140‑1 (MQ=255)                                                                                      gAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACCCTCTGCCATGTGTTCGGGGTTCATCgcag                                          <  2:336365/140‑1 (MQ=255)                                                                                            ggTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTa                                    >  2:321537/1‑140 (MQ=255)                                                                                             gtgtTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTAc                                   <  2:692571/140‑1 (MQ=255)                                                                                              tgtTGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACa                                  >  1:336818/1‑140 (MQ=255)                                                                                                 tGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAAt                               <  2:143535/140‑1 (MQ=255)                                                                                                 tGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAAt                               <  1:671774/140‑1 (MQ=255)                                                                                                 tGCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAAt                               <  1:511723/140‑1 (MQ=255)                                                                                                  gCATTGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATa                              <  2:316466/140‑1 (MQ=255)                                                                                                     ttGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTg                           >  2:709661/1‑140 (MQ=255)                                                                                                     ttGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTg                           >  1:182634/1‑140 (MQ=255)                                                                                                      tGACAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTgg                          >  1:575742/1‑140 (MQ=255)                                                                                                        aCAGATTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGaa                        >  1:436245/1‑140 (MQ=255)                                                                                                           aaTTGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGaaaaa                     <  1:709661/139‑1 (MQ=255)                                                                                                             ttGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAAcc                   >  1:172733/1‑140 (MQ=255)                                                                                                             ttGAATCTACAACCGCGCTCTTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCCGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAAcc                   >  1:757891/1‑140 (MQ=255)                                                                                                                                ctTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATTCTGGAAAAACCGTCCTGAAAAGCcagac  >  2:585278/1‑138 (MQ=255)                                                                                                                                ctTGGTGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATTCTGGAAAAACCGTCCTGAAAAGCcagac  <  1:585278/138‑1 (MQ=255)                                                                                                                                    |                                                                                                                                      TCAACATGAACTAGATCTGGTTGCTGCTCAGCTAAACAACAGACCGAGAAAGACACTGAAGTTCAAAACACCGAAAGAGATAATTGAAAGGGGTGTTGCATTGACAGATTGAATCTACAACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGAAACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATACTGGAAAAACCGTCCTGAAAAGCCAGAC  >  NC_000913/271643‑271907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑