Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,712,106 | A→G | intergenic (‑99/+130) | yhjX ← / ← yhjY | putative pyruvate transporter/conserved protein YhjY |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,712,106 | 0 | A | G | 98.4% | 219.0 / ‑4.7 | 63 | intergenic (‑99/+130) | yhjX/yhjY | putative pyruvate transporter/conserved protein YhjY |
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (31/31); total (32/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGTCAGCCAGCGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGAACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAATTGTGACTGTTACGTTAA > NC_000913/3711969‑3712239 | tgtCAGCCAGCGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGAc > 1:259427/1‑140 (MQ=255) agcGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGaa < 1:820191/140‑1 (MQ=255) agcGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGaa > 1:524906/1‑140 (MQ=255) gcGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGaaa < 1:92521/140‑1 (MQ=255) cGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGGCGGAATGAAAt > 1:294377/1‑140 (MQ=255) cGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAAt > 2:235796/1‑140 (MQ=255) cGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAAt > 1:210713/1‑140 (MQ=255) cGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAAt > 1:2467/1‑140 (MQ=255) tACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCt < 2:114938/140‑1 (MQ=255) gATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAAACTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGGAAAAAGGCATGAAAAGCCATCAGGACGGAATGAAATGCCTTAGTTc > 2:92521/1‑140 (MQ=255) aTAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCa < 2:536767/140‑1 (MQ=255) aTAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCa < 1:235796/140‑1 (MQ=255) tGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGgaatg > 2:109302/1‑140 (MQ=255) ggTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGaatgaatg > 2:859555/1‑140 (MQ=255) tCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGAcgc > 2:785747/1‑140 (MQ=255) cATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGAcgcg > 1:692751/1‑140 (MQ=255) gTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGa > 1:863780/1‑134 (MQ=255) gTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGa < 2:863780/134‑1 (MQ=255) gTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCCGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAatta > 1:696390/1‑140 (MQ=255) tATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCCGGAATGAATGACGCGACAattat > 2:591433/1‑140 (MQ=255) cTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCAcc < 2:784201/140‑1 (MQ=255) tGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCGATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCa > 2:758012/1‑140 (MQ=255) ataaAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATttat > 1:587227/1‑140 (MQ=255) aGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTg > 2:400953/1‑140 (MQ=255) gcaaaaTCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGt < 2:587227/138‑1 (MQ=255) gAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCa > 1:439761/1‑125 (MQ=255) gAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCa < 2:439761/125‑1 (MQ=255) gAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGt > 2:124590/1‑140 (MQ=255) aaaaaTCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTa < 1:400953/140‑1 (MQ=255) aaaaaTCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTa < 1:327986/140‑1 (MQ=255) aaaTCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAg < 1:17295/140‑1 (MQ=255) ctGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCa < 1:109302/140‑1 (MQ=255) tGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCAc < 1:121353/140‑1 (MQ=255) tGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCAc > 2:740456/1‑140 (MQ=255) gCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCAcc < 2:131441/140‑1 (MQ=255) aCAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTa > 1:824714/1‑126 (MQ=255) aCAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTa < 2:824714/126‑1 (MQ=255) aCAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACt < 1:740456/140‑1 (MQ=255) aTAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGcc < 2:839220/140‑1 (MQ=255) tAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCca > 1:128197/1‑140 (MQ=255) aCGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCcaca < 1:124590/140‑1 (MQ=255) cGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACaa < 1:785747/140‑1 (MQ=255) gAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAAc < 2:351056/140‑1 (MQ=255) aGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTa < 2:524906/140‑1 (MQ=255) tGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCAccc < 1:59413/122‑1 (MQ=255) tGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCAccc > 2:59413/1‑122 (MQ=255) tGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGc > 2:510648/1‑130 (MQ=255) tGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGc < 1:510648/130‑1 (MQ=255) tGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTAtt > 1:116602/1‑140 (MQ=255) tGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTAtt > 1:638464/1‑140 (MQ=255) aTGCCTGGGGAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTa < 1:648994/140‑1 (MQ=255) ggggAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGtt > 2:157625/1‑140 (MQ=255) ggggAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGtt > 2:744978/1‑140 (MQ=255) gggAAAAACGGCATGTAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGttt > 2:738676/1‑140 (MQ=255) gggAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGttt > 1:572829/1‑140 (MQ=255) gggAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGttt > 1:848148/1‑140 (MQ=255) gggAAAAACGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGttt > 2:242294/1‑140 (MQ=255) aaaaCGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCCGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAAt < 1:591433/140‑1 (MQ=255) aaaCGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAAtt < 1:140387/140‑1 (MQ=255) aCGGCATGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGCCGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAATtgt < 2:572829/140‑1 (MQ=255) tGAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAATTGTGACTGt < 2:116602/140‑1 (MQ=255) gAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAATTGTGACTGtt < 1:744978/140‑1 (MQ=255) gAAATGCCATCAGGACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAATTGTGACTGtt < 2:848148/140‑1 (MQ=255) cATCAGAACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAATTGTGACTGTTACGTTaa > 2:267803/1‑140 (MQ=255) | TGTCAGCCAGCGGGTACGCTGATAATTTGAAGGTGTCATGGCAGTATTCCTGCAGTAATAAAAAGGAAAAATCTCTGCCGACAACCATAACGAAGTGCACTTTATGCCTGGGGAAAAACGGCATGAAATGCCATCAGAACGGAATGAAATGCCTTAGTTCAGGAATGAATGACGCGACAATTATTCACCAAATTTATTATTTGGTAAGTTAGCACCCACTATCGCCACAACTATTGTTATTTAATGGTTTCAATTGTGACTGTTACGTTAA > NC_000913/3711969‑3712239 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |