| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,255,072 | A→G | G465G (GGT→GGC) | plsB ← | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,255,072 | 0 | A | G | 98.4% | 215.4 / ‑5.3 | 63 | G465G (GGT→GGC) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (29/33); minor base C (0/1); total (29/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGATATAGATCGGA > NC_000913/4254938‑4255207 | gcagcaATATTATTGACCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCAATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTg > 1:687935/1‑140 (MQ=255) agcaATATTATTGACCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGAc < 2:203802/140‑1 (MQ=255) attGACCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTAc > 1:689423/1‑140 (MQ=255) aCCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAg < 2:71440/140‑1 (MQ=255) cGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGGTAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAgct > 1:849831/1‑140 (MQ=255) cGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAgct > 1:428909/1‑140 (MQ=255) cGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGACATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAgct > 2:377561/1‑140 (MQ=255) cGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCAATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAgct < 2:687935/140‑1 (MQ=255) ttAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTaaa < 2:143917/140‑1 (MQ=255) tAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGTCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAAc < 2:76202/140‑1 (MQ=255) tAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAAc < 1:825254/140‑1 (MQ=255) tGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGCAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCgca < 2:689423/140‑1 (MQ=255) cGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTg > 2:673070/1‑140 (MQ=255) aCCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTAACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCgg > 2:290528/1‑140 (MQ=255) cGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCa < 2:428909/140‑1 (MQ=255) cTTCGATGGGATCGGTAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAgg < 2:849831/140‑1 (MQ=255) ttCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGc > 1:198946/1‑140 (MQ=255) aTCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCtctctttct > 1:539037/1‑140 (MQ=255) tCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTcgc > 1:356086/1‑140 (MQ=255) tCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTcgc > 2:217340/1‑140 (MQ=255) cACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTcgcg < 2:176081/140‑1 (MQ=255) cGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTcgcgcc > 1:788340/1‑140 (MQ=255) cAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTcgcgccgcg < 2:183725/140‑1 (MQ=255) gTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCa < 1:191039/140‑1 (MQ=255) tCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAg > 1:858646/1‑140 (MQ=255) ggTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTTAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTc < 1:421897/140‑1 (MQ=255) tGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGc > 1:442830/1‑140 (MQ=255) gCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTcgcgccgcg < 2:188821/127‑1 (MQ=255) gCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTcgcgccgcg > 1:188821/1‑127 (MQ=255) gCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCg < 2:356086/140‑1 (MQ=255) gCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCg > 1:837653/1‑140 (MQ=255) gCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCg > 2:830217/1‑140 (MQ=255) gTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAg > 1:859961/1‑140 (MQ=255) ttAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGt > 1:151063/1‑140 (MQ=255) aaGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTAc < 2:715732/140‑1 (MQ=255) aggtaggtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTAcc < 2:859961/140‑1 (MQ=255) aggtaggtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTAcc < 1:673070/140‑1 (MQ=255) gtaggtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCa < 2:151063/140‑1 (MQ=255) gtaggtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCa < 2:837653/140‑1 (MQ=255) gtaggtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCa < 2:442830/140‑1 (MQ=255) gtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCa < 1:126521/136‑1 (MQ=255) gtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCa > 2:126521/1‑136 (MQ=255) gtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTc > 2:116673/1‑140 (MQ=255) gtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTc > 2:397564/1‑140 (MQ=255) gtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTc > 1:326672/1‑140 (MQ=255) gtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTc > 1:351462/1‑140 (MQ=255) gtCATCAACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCAGCAGGCTCTCTTTGTCTTGCGTCGCGCCGAGCAGTTATTTGGCGTAAGTACCCACGTc > 2:544548/1‑140 (MQ=255) caACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCa > 2:25308/1‑131 (MQ=255) caACGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCa < 1:25308/131‑1 (MQ=255) aaCGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGAc < 1:830217/140‑1 (MQ=255) aCGGCATTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACg < 2:368112/140‑1 (MQ=255) aTTGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTc < 1:116673/140‑1 (MQ=255) ttGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCa > 2:429900/1‑140 (MQ=255) tGGTTCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCAt < 1:217340/140‑1 (MQ=255) tGGTTCACCGAAGTTGACGTACCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTCTGGCGTAAGTACCCACTTCCATGACGTGCTCAt < 2:788340/140‑1 (MQ=255) ttCACCGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAAc < 2:198946/140‑1 (MQ=255) ccGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGat < 2:351462/140‑1 (MQ=255) ccGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGat < 2:326672/140‑1 (MQ=255) cGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGata > 2:398337/1‑140 (MQ=255) cGAAGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGata < 2:858646/140‑1 (MQ=255) aaGTTGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGAtata > 1:461333/1‑140 (MQ=255) ttGACGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGATATAGAt < 2:539037/140‑1 (MQ=255) cGTAGCCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGATATAGATCGGa < 1:398337/140‑1 (MQ=255) | GCAGCAATATTATTGACCGTCGGCGTTAACCATGCCGGACGCACCGCTTCGATGGGATCGATAGATTCACGCCAGTCAGGTACATGCTGGTTAAGGTAGGTCATCAACGGCATTGGTTCACCGAAGTTGACGTAACCCTGACCGAGATTACGCAGCTTGCTTAAACCGCGCAGCATCTGCGGCAGGCTCTCTTTCTCTTTCGTCGCGCCGCGCAGTTCTTTGGCGTAAGTACCCACTTCCATGACGTGCTCATAACCGATATAGATCGGA > NC_000913/4254938‑4255207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |