Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,622,6620CT45.3% 12.2 / 207.6 159L1157L (CTC→CTT) rhsBrhs element protein RhsB
Reads supporting (aligned to +/- strand):  ref base C (44/43);  new base T (33/39);  total (77/82)
Fisher's exact test for biased strand distribution p-value = 6.33e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.38e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 160 total aligned reads displayed.

TGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCC  >  NC_000913/3622523‑3622795
                                                                                                                                           |                                                                                                                                     
       ggAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCa                                                                                                                                <  1:666956/140‑1 (MQ=32)
       gaaaaGCCGCCGCTGGGTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGCCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCa                                                                                                                                <  1:684835/138‑1 (MQ=12)
         aaaGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACg                                                                                                                              >  2:224985/1‑140 (MQ=32)
         aaaGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACg                                                                                                                              >  2:834735/1‑140 (MQ=32)
            gccgccGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGaa                                                                                                                           >  2:234953/1‑140 (MQ=32)
             ccgccgCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAg                                                                                                                          >  1:543687/1‑140 (MQ=32)
              cgccgcTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACAGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAgg                                                                                                                         <  2:340458/140‑1 (MQ=17)
                ccgcTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAggga                                                                                                                       <  2:756132/140‑2 (MQ=17)
                ccgcTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAggga                                                                                                                       <  1:363485/140‑2 (MQ=17)
                        tggcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCTCCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCg                                                                                                               <  2:288727/140‑1 (MQ=9)
                        tggcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCg                                                                                                               <  1:224985/140‑1 (MQ=17)
                          gcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCgtg                                                                                                             <  2:274249/140‑1 (MQ=12)
                              cGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgc                                                                                                         <  1:1161627/140‑1 (MQ=17)
                              cGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgc                                                                                                         <  1:1070797/140‑1 (MQ=17)
                               gTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcg                                                                                                        <  1:1095131/140‑1 (MQ=12)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgcgc                                                                                                       >  2:124467/1‑140 (MQ=18)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCgtg                                                                                                             >  1:709144/1‑134 (MQ=18)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCgtg                                                                                                             <  2:709144/134‑1 (MQ=12)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       >  2:1026503/1‑140 (MQ=18)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       >  2:239078/1‑140 (MQ=18)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       >  1:389564/1‑140 (MQ=18)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       >  1:84318/1‑140 (MQ=18)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       <  1:322611/140‑1 (MQ=12)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       >  1:1255542/1‑140 (MQ=18)
                                tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCAGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgcgc                                                                                                       >  1:455264/1‑140 (MQ=18)
                                 gCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCa                                                                                                      <  1:1022836/140‑1 (MQ=17)
                                   ggCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGa                                                                                                    <  1:124467/140‑1 (MQ=17)
                                   ggCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGa                                                                                                    <  2:389564/140‑1 (MQ=12)
                                   ggCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGa                                                                                                    <  1:133087/140‑1 (MQ=12)
                                    gCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGaa                                                                                                   >  1:467420/1‑140 (MQ=18)
                                    gCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       <  1:879754/136‑1 (MQ=12)
                                    gCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                       >  2:879754/1‑136 (MQ=18)
                                        gACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAatacg                                                                                               <  2:87593/140‑3 (MQ=17)
                                        gACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAatacg                                                                                               <  1:759770/140‑3 (MQ=17)
                                         aCCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATatga                                                                                              >  2:712464/1‑140 (MQ=18)
                                          ccGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATacgat                                                                                             >  2:484727/1‑140 (MQ=18)
                                                                  tGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCtgaatgaa                                                                     <  2:675467/140‑1 (MQ=18)
                                                                     aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCtgaat                                                                        <  2:763280/134‑1 (MQ=9)
                                                                     aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCtgaat                                                                        >  1:763280/1‑134 (MQ=14)
                                                                     aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAagag                                                                  >  2:190277/1‑140 (MQ=21)
                                                                       ccGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGaa                                                                >  2:660383/1‑140 (MQ=21)
                                                                          gtgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAAccc                                                             >  2:978587/1‑140 (MQ=21)
                                                                           tgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCtgaatgaa                                                                     >  2:1160234/1‑131 (MQ=18)
                                                                           tgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCtgaatgaa                                                                     <  1:1160234/131‑1 (MQ=18)
                                                                            gtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGc                                                           <  1:943363/140‑1 (MQ=255)
                                                                             tACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCa                                                          <  2:1067422/140‑1 (MQ=255)
                                                                               cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAGGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATc                                                        >  1:799831/1‑140 (MQ=255)
                                                                               cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCa                                                          >  1:315439/1‑138 (MQ=21)
                                                                               cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCa                                                          <  2:315439/138‑1 (MQ=25)
                                                                                 cGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAg                                                      <  1:1227786/140‑1 (MQ=255)
                                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                                                   >  1:492120/1‑140 (MQ=255)
                                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACAATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATc                                                        <  2:3852/135‑1 (MQ=255)
                                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACAATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATc                                                        >  1:3852/1‑135 (MQ=255)
                                                                                    cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTg                                                   >  1:1098106/1‑140 (MQ=255)
                                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                  >  2:1108887/1‑140 (MQ=255)
                                                                                     ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                  >  2:118595/1‑140 (MQ=255)
                                                                                      gcgcGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgca                                                 <  1:776178/140‑1 (MQ=255)
                                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                >  1:802070/1‑140 (MQ=255)
                                                                                       cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                >  1:166591/1‑140 (MQ=255)
                                                                                            aaaaTCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCt                                           <  1:834735/140‑1 (MQ=255)
                                                                                            aaaaTCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCt                                           >  2:163717/1‑140 (MQ=255)
                                                                                                tCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATc                                       <  1:1108887/140‑1 (MQ=255)
                                                                                                 ccACCTGTACCACTGCGACCATTGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATcc                                      >  1:767526/1‑140 (MQ=255)
                                                                                                       gTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGc                                <  1:165316/140‑1 (MQ=12)
                                                                                                            aCTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                           <  2:543687/140‑1 (MQ=9)
                                                                                                             cTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgc                          >  2:1218415/1‑140 (MQ=12)
                                                                                                             cTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgc                          >  1:1116299/1‑140 (MQ=12)
                                                                                                               gctaCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                           <  2:1116315/134‑1 (MQ=255)
                                                                                                               gCGACCATTGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        <  2:767526/140‑1 (MQ=255)
                                                                                                               gCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcag                        >  1:249863/1‑140 (MQ=12)
                                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           <  1:728659/137‑1 (MQ=255)
                                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                           >  2:728659/1‑137 (MQ=255)
                                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        <  2:254416/140‑1 (MQ=255)
                                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        >  2:530438/1‑140 (MQ=255)
                                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCC‑GCTGccccggca                         <  2:1038432/138‑7 (MQ=11)
                                                                                                               gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCC‑GCTGCCCCGgca                         >  1:1038432/1‑138 (MQ=11)
                                                                                                                cGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagc                       <  1:949117/140‑1 (MQ=9)
                                                                                                                cGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagc                       <  2:492120/140‑1 (MQ=9)
                                                                                                                 gACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagca                      <  2:802070/140‑1 (MQ=9)
                                                                                                                 gACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagca                      <  1:561075/140‑1 (MQ=255)
                                                                                                                 gACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagca                      <  2:522946/140‑1 (MQ=255)
                                                                                                                  aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGcagcag                     >  2:819061/1‑140 (MQ=16)
                                                                                                                  aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCTGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        >  1:356041/1‑137 (MQ=255)
                                                                                                                  aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCTGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                        <  2:356041/137‑1 (MQ=255)
                                                                                                                  aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGcagcag                     >  2:1097002/1‑140 (MQ=255)
                                                                                                                   ccATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGt                    <  1:1265162/140‑1 (MQ=255)
                                                                                                                     aTCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                           >  1:690498/1‑131 (MQ=16)
                                                                                                                     aTCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTat                  >  1:788125/1‑140 (MQ=16)
                                                                                                                     aTCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTat                  >  1:637376/1‑140 (MQ=16)
                                                                                                                          ggCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTAtgatga             >  2:1006576/1‑140 (MQ=255)
                                                                                                                               gCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGt        <  2:455264/140‑1 (MQ=9)
                                                                                                                                  gCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTTAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCg     <  2:1227023/140‑1 (MQ=255)
                                                                                                                                  gCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCg     <  2:703998/140‑1 (MQ=255)
                                                                                                                                   cTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCgg    <  1:1218415/140‑1 (MQ=12)
                                                                                                                                    tGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc   <  2:637376/140‑1 (MQ=9)
                                                                                                                                    tGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc   <  1:639085/140‑1 (MQ=9)
                                                                                                                                    tGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc   <  1:206970/140‑1 (MQ=255)
                                                                                                                                    tGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc   <  1:712464/140‑1 (MQ=255)
                                                                                                                                     ggCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc  <  2:467420/140‑1 (MQ=9)
                                                                                                                                     ggCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc  <  1:354653/140‑1 (MQ=9)
                                                                                                                                           |                                                                                                                                     
TGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCC  >  NC_000913/3622523‑3622795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑