Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,622,6780GA45.4% 98.5 / 210.6 163A1163T (GCA→ACA) rhsBrhs element protein RhsB
Reads supporting (aligned to +/- strand):  ref base G (43/46);  new base A (37/37);  total (80/83)
Fisher's exact test for biased strand distribution p-value = 8.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 167 total aligned reads displayed.

TGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGC  >  NC_000913/3622547‑3622815
                                                                                                                                   |                                                                                                                                         
tggcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACTAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCg                                                                                                                                   <  2:1062088/140‑1 (MQ=12)
tggcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCg                                                                                                                                   <  1:224985/140‑1 (MQ=17)
tggcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCg                                                                                                                                   <  2:1170709/140‑1 (MQ=9)
tggcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCg                                                                                                                                   <  2:1143251/140‑1 (MQ=9)
  gcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCgtg                                                                                                                                 >  2:294869/1‑140 (MQ=18)
  gcATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCgtg                                                                                                                                 <  2:274249/140‑1 (MQ=12)
      cGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgc                                                                                                                             <  1:1161627/140‑1 (MQ=17)
      cGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgc                                                                                                                             <  1:1225900/140‑1 (MQ=17)
       gTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgcg                                                                                                                            <  1:512148/140‑1 (MQ=17)
       gTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcg                                                                                                                            <  1:1095131/140‑1 (MQ=12)
        tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAGAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTgcgc                                                                                                                           >  1:376109/1‑140 (MQ=18)
        tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCgtg                                                                                                                                 >  1:709144/1‑134 (MQ=18)
        tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                                           >  1:389564/1‑140 (MQ=18)
        tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                                           >  1:84318/1‑140 (MQ=18)
        tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                                           >  2:1026503/1‑140 (MQ=18)
        tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                                           >  2:239078/1‑140 (MQ=18)
        tGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                                           <  1:159502/140‑1 (MQ=12)
         gCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCa                                                                                                                          <  1:1022836/140‑1 (MQ=17)
           ggCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGa                                                                                                                        <  1:124467/140‑1 (MQ=17)
           ggCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGa                                                                                                                        <  1:489613/140‑1 (MQ=12)
           ggCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGa                                                                                                                        <  2:389564/140‑1 (MQ=12)
           ggCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGa                                                                                                                        <  1:133087/140‑1 (MQ=12)
            gCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGaa                                                                                                                       >  1:467420/1‑140 (MQ=18)
            gCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                                           <  1:879754/136‑1 (MQ=12)
            gCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTgcgc                                                                                                                           >  2:879754/1‑136 (MQ=18)
                gACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAatacg                                                                                                                   <  2:709988/140‑3 (MQ=17)
                             aTGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCaa                                                                                                      >  1:675467/1‑140 (MQ=18)
                                       aGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCtgaat                                                                                            >  1:71473/1‑140 (MQ=14)
                                       aGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCtgaat                                                                                            >  2:474999/1‑140 (MQ=14)
                                        gATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCtgaatg                                                                                           >  1:766162/1‑140 (MQ=17)
                                         aTGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCtgaatga                                                                                          >  1:1053911/1‑140 (MQ=17)
                                             aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCtgaat                                                                                            >  1:763280/1‑134 (MQ=14)
                                             aCCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAagag                                                                                      <  1:234953/140‑1 (MQ=255)
                                               ccGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGaa                                                                                    >  2:660383/1‑140 (MQ=21)
                                                  gtgtACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAAccc                                                                                 >  2:978587/1‑140 (MQ=21)
                                                     tACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCa                                                                              >  1:620913/1‑140 (MQ=21)
                                                       cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCa                                                                              <  2:315439/138‑1 (MQ=25)
                                                       cacGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCa                                                                              >  1:315439/1‑138 (MQ=21)
                                                        acGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCa                                                                           >  2:487801/1‑140 (MQ=21)
                                                            cGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACAATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATc                                                                            <  2:3852/135‑1 (MQ=255)
                                                             ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                                      >  2:118595/1‑140 (MQ=255)
                                                             ggCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgc                                                                      >  2:1108887/1‑140 (MQ=255)
                                                              gcgcGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgca                                                                     <  1:776178/140‑1 (MQ=255)
                                                               cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                                    >  2:165316/1‑140 (MQ=255)
                                                               cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                                    >  1:166591/1‑140 (MQ=255)
                                                               cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                                    >  1:802070/1‑140 (MQ=255)
                                                               cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                                    >  2:253956/1‑140 (MQ=255)
                                                               cgcgAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTgcag                                                                    <  1:416822/140‑1 (MQ=255)
                                                                    aaaaTCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCt                                                               <  1:834735/140‑1 (MQ=255)
                                                                    aaaaTCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCt                                                               >  2:163717/1‑140 (MQ=255)
                                                                                    aCTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                               <  2:543687/140‑1 (MQ=9)
                                                                                    aCTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                               <  2:71473/140‑1 (MQ=9)
                                                                                     cTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgc                                              >  2:1218415/1‑140 (MQ=12)
                                                                                     cTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgc                                              >  1:1116299/1‑140 (MQ=12)
                                                                                     cTGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgg                                                 <  1:984681/137‑1 (MQ=255)
                                                                                      tGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgca                                             >  1:1248334/1‑140 (MQ=255)
                                                                                      tGCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgca                                             >  1:79664/1‑140 (MQ=255)
                                                                                       gctaCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                               >  1:1116315/4‑137 (MQ=255)
                                                                                       gCGACCATTGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                                            <  2:767526/140‑1 (MQ=255)
                                                                                       gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                                               <  1:728659/137‑1 (MQ=255)
                                                                                       gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCgggg                                               >  2:728659/1‑137 (MQ=255)
                                                                                       gCGACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCC‑GCTGccccggca                                             <  2:1038432/138‑7 (MQ=11)
                                                                                        cGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagc                                           <  1:949117/140‑1 (MQ=9)
                                                                                         gACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGgcagca                                          <  2:802070/140‑1 (MQ=9)
                                                                                         gACCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcagca                                          <  2:522946/140‑1 (MQ=255)
                                                                                          aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGcagcag                                         >  2:526925/1‑140 (MQ=16)
                                                                                          aCCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGcagcag                                         >  2:819061/1‑140 (MQ=16)
                                                                                          aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCTGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                                            >  1:356041/1‑137 (MQ=255)
                                                                                          aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCTGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGgcag                                            <  2:356041/137‑1 (MQ=255)
                                                                                          aCCATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCTGGCTGCCGGGGcagcag                                         >  2:862617/1‑140 (MQ=255)
                                                                                           ccATCGCGGCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGt                                        <  1:1265162/140‑1 (MQ=255)
                                                                                             aTCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                               <  2:690498/131‑1 (MQ=9)
                                                                                             aTCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCgggg                                               >  1:690498/1‑131 (MQ=16)
                                                                                             aTCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTat                                      >  1:637376/1‑140 (MQ=16)
                                                                                             aTCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTat                                      >  1:788125/1‑140 (MQ=16)
                                                                                                  ggCCTGCCGCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTAtgatga                                 <  2:779313/140‑1 (MQ=255)
                                                                                                      tGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGGGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATgagga                              >  2:1107517/1‑139 (MQ=11)
                                                                                                      tGCCGCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATgagga                              <  1:1107517/139‑1 (MQ=9)
                                                                                                          gCTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTTAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCg                         <  2:1227023/140‑1 (MQ=255)
                                                                                                          gCTGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCg                         <  2:703998/140‑1 (MQ=255)
                                                                                                           cTGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCgg                        <  1:1218415/140‑1 (MQ=12)
                                                                                                            tGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                       <  1:639085/140‑1 (MQ=9)
                                                                                                            tGGCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                       <  2:637376/140‑1 (MQ=9)
                                                                                                            tGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                       <  1:1097002/140‑1 (MQ=255)
                                                                                                            tGGCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                       <  1:206970/140‑1 (MQ=255)
                                                                                                             ggCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc                      <  1:354653/140‑1 (MQ=9)
                                                                                                             ggCGCTCATCAGCACGGAAGGGACAACAGCGTGGTGCGCAGAATACGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc                      <  2:467420/140‑1 (MQ=9)
                                                                                                             ggCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc                      <  2:76139/140‑1 (MQ=255)
                                                                                                             ggCCCTTATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGcc                      <  2:1255542/140‑1 (MQ=255)
                                                                                                                ccttatcaGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                       >  2:227512/5‑136 (MQ=255)
                                                                                                                   tatcaGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGc                       >  1:756570/2‑133 (MQ=255)
                                                                                                                        gCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAc           >  1:422922/1‑140 (MQ=255)
                                                                                                                        gCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAc           >  1:1033561/1‑140 (MQ=40)
                                                                                                                        gCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAc           >  1:343412/1‑140 (MQ=255)
                                                                                                                              aaGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGc        <  1:1194520/137‑1 (MQ=40)
                                                                                                                              aaGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAc     >  2:1076666/1‑140 (MQ=255)
                                                                                                                              aaGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAc     >  2:638616/1‑140 (MQ=255)
                                                                                                                              aaGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAc     >  2:1226504/1‑140 (MQ=40)
                                                                                                                               aGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCGGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCAcc    <  2:43045/140‑1 (MQ=255)
                                                                                                                                ggggCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCg   <  1:294869/140‑1 (MQ=40)
                                                                                                                                   |                                                                                                                                         
TGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCCGGTGTACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATCGCGGCCTGCCGCTGGCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGGCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCCACCGC  >  NC_000913/3622547‑3622815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑