| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,462,889 | (C)9→10 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,462,880 | 1 | . | C | 84.6% | 105.7 / 14.8 | 39 | intergenic (+234/‑132) | fadL/yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| Reads supporting (aligned to +/- strand): ref base . (2/4); new base C (14/19); total (16/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.15e-01 | |||||||||||
TTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCA > NC_000913/2462743‑2463012 | ttGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cc > 2:285015/1‑140 (MQ=255) gCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccc < 2:547331/140‑1 (MQ=255) gCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccc < 2:638169/140‑1 (MQ=255) gCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccc < 1:374814/140‑1 (MQ=255) gCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccc < 1:350153/140‑1 (MQ=255) aaaCAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccccc < 2:695741/140‑1 (MQ=255) aGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccccccccc < 2:583771/140‑2 (MQ=255) cTGTTGGCAGCTTCCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccccccccctgg < 2:510482/140‑5 (MQ=255) aggttGGCCTTTTAAAACAATAAGGCGTTTTCCCAGGCAAACCC‑TAAGGGAAAGGCATTTTTTCAGGGCTTTTTCCCCGCCTTCC‑CAAAGAGTTTTCTTTTCTTCATTTCCAGGAT‑TCCC‑CCCCCCCCCTGGCTATtgtg < 2:595121/137‑1 (MQ=255) aGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATtgtg < 1:663610/140‑1 (MQ=255) gCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTgc > 2:216389/1‑140 (MQ=255) gCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTgc > 2:782576/1‑140 (MQ=255) gCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTgcg < 1:264384/140‑1 (MQ=255) gCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccccccc > 2:345090/1‑122 (MQ=255) gCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCCTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑cccccccc < 1:345090/122‑1 (MQ=255) cAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACt < 1:385079/140‑1 (MQ=255) aaaTCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTc < 2:352360/140‑1 (MQ=255) tAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTaa > 2:479211/1‑140 (MQ=255) tAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTaa > 1:711095/1‑140 (MQ=255) tAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTaa > 2:704195/1‑140 (MQ=255) gCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:255651/140‑1 (MQ=255) cGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:464131/140‑1 (MQ=255) cGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:704195/140‑1 (MQ=255) cGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 2:318370/140‑1 (MQ=255) cGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:114919/140‑1 (MQ=255) ggTATCC‑CAGGCAAAACTGGAAGGGAAAGGATTTTTTTTGGCCGTTC‑GGTGCTGCTTCTCCAAAGGGTTTACTTTTTCTAATTTCCAGGATGTTCC‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 2:670090/140‑1 (MQ=255) tCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGtt < 1:216389/140‑1 (MQ=255) tCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGtt < 1:782576/140‑1 (MQ=255) tCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTc > 1:256995/1‑140 (MQ=255) acaGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:161615/132‑1 (MQ=255) acaGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt > 2:161615/1‑132 (MQ=255) gACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt < 1:467096/129‑1 (MQ=255) gACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGAt > 2:467096/1‑129 (MQ=255) aaCCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaat > 1:558845/1‑140 (MQ=255) aCCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATg > 1:765461/1‑140 (MQ=255) aCCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATg > 2:337809/1‑140 (MQ=255) aCCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGa > 2:511203/1‑140 (MQ=255) ccT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTaaataaatag > 1:68110/1‑138 (MQ=255) aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg > 1:601848/1‑136 (MQ=255) aGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAg < 2:601848/136‑1 (MQ=255) ggAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGttttt < 1:511203/140‑1 (MQ=255) aaaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGtttttt > 1:306343/1‑140 (MQ=255) aaGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 2:256995/140‑1 (MQ=255) aGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGa < 2:558845/140‑1 (MQ=255) gCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATa < 1:520808/140‑1 (MQ=255) atatTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGt < 1:599391/140‑1 (MQ=255) aGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCa > 1:319080/1‑140 (MQ=255) aGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCa < 1:285015/140‑1 (MQ=255) aGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCa < 1:432717/140‑1 (MQ=255) gCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCAtt < 2:306343/140‑1 (MQ=255) ttCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACTCCCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAgg < 2:765461/140‑1 (MQ=255) t‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCa < 2:5493/133‑1 (MQ=255) t‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCa > 1:5493/1‑133 (MQ=255) | TTGCAAACAGCCTGTTGGCAGCTTGCCCTTTCAAATCAATAAGCGGTATCCACAGACAAACCT‑GAAGGGAAAGGCATATTTTCAGGCGTTCTGCTCGTCCTTCT‑CAAAGAGTTTACTTTTCTGCATTTCCAGGA‑‑TACT‑CCCCCCCCCTGGCTATTGTGCGCTCATACACTCAAATTAAAGATAGGTTCTAAATAAATGAGCGTTTTTTGATAGTCTATTTCATTAGGTAATATATATTTGTAACAAATCAATCAAAATGGAATAAAATCA > NC_000913/2462743‑2463012 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |