| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 58 (1.230) | 43/276 | 0.1 | 98.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 1 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||
TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3653096‑3653230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGGCCATGGAATT < NC_000913/3766089‑3765953 TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAAT > 2:116575/1‑140TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAAT > 1:671748/1‑140TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAAT > 2:54061/1‑140TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCC‑GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATG < 2:351983/140‑1 CTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATG < 1:253514/140‑1 TCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGC < 2:33713/140‑1 TTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAG > 1:352380/1‑140 TCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTC < 2:730973/140‑1 GTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGG > 2:157201/1‑140 CTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGAT < 1:135327/140‑1 ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGA < 1:102366/136‑1 ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGA > 2:102366/1‑136 CGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATT < 1:157201/140‑1 CGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATT < 1:187887/140‑1 GCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTA > 2:408885/1‑134 GCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTA < 1:408885/134‑1 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGA < 2:518623/140‑1 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGA < 2:531613/140‑1 TGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTC‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAG > 1:618191/1‑140 AATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTC > 1:433422/1‑140 ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATA < 1:116575/140‑1 ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCACGGATTATTCAATATTAGAGTGTCAAATA > 2:296050/1‑140 CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTT > 2:627165/1‑140 CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTT > 1:471089/1‑140 GACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTC > 2:455553/1‑140 ACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCC < 1:50063/140‑1 ACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCC < 1:594043/140‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTC < 1:122484/140‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTC‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTC < 2:618191/140‑1 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCATTCCACCATTTTGTCAATGCTTTTGC > 1:124817/1‑140 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCA < 1:54061/140‑1 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATT < 2:413143/122‑1 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATT > 1:413143/1‑122 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAG > 2:460127/1‑140 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCA < 2:671748/140‑1 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCAT > 1:736193/1‑140 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCAT > 2:154799/1‑140 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCAT > 1:424411/1‑140 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCA < 2:252080/136‑1 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCA > 1:252080/1‑136 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTAT > 1:618498/1‑140 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCA > 1:691531/1‑140 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCAT < 1:627165/140‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATC > 2:786113/1‑140 ACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCATTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCT < 2:124817/140‑1 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCT < 1:460127/140‑1 ATGATCTCATATCGGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTG > 2:317991/1‑140 ATGATCTCATATCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTG < 2:424411/140‑1 TCAGGGACTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAG < 2:195640/140‑1 CTTGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTT > 1:10658/1‑140 TGTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGG > 2:139157/1‑140 GTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGG > 2:256122/1‑140 GTTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGG > 2:642279/1‑140 TTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGGC > 1:52063/1‑140 TTCGCACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGGC > 1:203491/1‑140 ACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGGCCA > 2:423080/1‑137 ACCTT‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGGCCA < 1:423080/137‑1 T‑CCCTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGGCCATGGAATT > 1:662664/1‑140 TCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTT‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3653096‑3653230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGCTAGTCCCGGATTATTCAATATTAGAGAGTCAAATATTCTTTGTGATGCTGTATCGTTCCACCATTTTGTCAATGCTTTTGCAGCATTATCATCTGCTTGCTGCTGTGCAGGGCTTTTGGGCCATGGAATT < NC_000913/3766089‑3765953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |