| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,876,104 | G→A | intergenic (+10/+36) | yidX → / ← yidA | putative lipoprotein YidX/sugar phosphatase YidA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,876,104 | 0 | G | A | 98.4% | 210.4 / ‑6.3 | 62 | intergenic (+10/+36) | yidX/yidA | putative lipoprotein YidX/sugar phosphatase YidA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (29/31); total (31/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTT > NC_000913/3875971‑3876238 | tGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCaaa < 2:72937/140‑1 (MQ=255)tGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCaaa < 1:47473/140‑1 (MQ=255) aCTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGAAAGCAGGCAAACGCGt > 1:351051/1‑140 (MQ=255) ttCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTAt > 1:531187/1‑140 (MQ=255) ttCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTAt > 1:491897/1‑140 (MQ=255) agagGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGttt > 2:399683/1‑140 (MQ=255) gagGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCaaa > 1:322370/1‑123 (MQ=255) gagGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCaaa < 2:322370/123‑1 (MQ=255) gagGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTg < 1:700348/140‑1 (MQ=255) gagGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTg > 1:504387/1‑140 (MQ=255) ggCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTgcc > 1:626024/1‑140 (MQ=255) gCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTgccc < 2:328895/140‑1 (MQ=255) gCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGAAAGCAGGCAAACGCGTTTATGCTGTTTgccc < 2:351051/140‑1 (MQ=255) ccGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCca < 2:343406/140‑1 (MQ=255) cGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTa < 1:594371/122‑1 (MQ=255) cGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTa > 2:594371/1‑122 (MQ=255) gtTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAAt > 2:727432/1‑140 (MQ=255) tttCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAAtt < 1:736393/140‑1 (MQ=255) tttCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAAtt < 2:531187/140‑1 (MQ=255) tCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCa < 2:491897/140‑1 (MQ=255) cGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGc < 1:399683/140‑1 (MQ=255) cagcaTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGcac > 1:87924/1‑140 (MQ=255) agcaTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGtaca < 1:363310/140‑1 (MQ=255) agcaTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGcaca < 1:561349/140‑1 (MQ=255) agcaTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGcaca < 2:504387/140‑1 (MQ=255) agcaTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGcaca < 1:106662/140‑1 (MQ=255) gcaTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAAtt > 1:282586/1‑132 (MQ=255) gcaTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAAtt < 2:282586/132‑1 (MQ=255) aTTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATAc < 1:779397/140‑1 (MQ=255) tACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACtt < 2:600893/140‑1 (MQ=255) aGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATa > 2:245585/1‑140 (MQ=255) tGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGc > 1:787847/1‑140 (MQ=255) tGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGc > 1:713128/1‑140 (MQ=255) cTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCaaa > 2:194894/1‑140 (MQ=255) cTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccacgc > 2:551579/1‑140 (MQ=255) cTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAacgccacgc < 2:720159/140‑1 (MQ=255) atcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCtt < 2:713128/140‑1 (MQ=255) tcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTc < 1:404756/140‑1 (MQ=255) catTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCa > 2:56720/1‑140 (MQ=255) ccGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTTAATAGCAAACGCCACGCCATCTTCAAGGTTAGAtt < 2:87924/140‑1 (MQ=255) cTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTgg > 1:655566/1‑140 (MQ=255) cTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTgg > 2:796024/1‑140 (MQ=255) cAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATCAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGa > 1:365279/1‑140 (MQ=255) aaTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGAc < 1:194894/140‑1 (MQ=255) aTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACa < 1:796024/140‑1 (MQ=255) gTTGTATATGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCg < 2:790198/140‑1 (MQ=255) tatGCAGTAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCActt > 2:2737/1‑140 (MQ=255) tAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCAc > 2:105705/1‑140 (MQ=255) tAAACCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACACCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCAc > 1:78067/1‑140 (MQ=255) aaaCCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACt > 2:170764/1‑140 (MQ=255) aaaCCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACt > 1:316667/1‑140 (MQ=255) aaCCAATAATCAGTAAGCTGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTg > 1:496083/1‑140 (MQ=255) aaCCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCTCTg > 1:272235/1‑140 (MQ=255) aaCCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTg < 1:170764/140‑1 (MQ=255) aCCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGcc < 1:364845/126‑1 (MQ=255) aCCAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGcc > 2:364845/1‑126 (MQ=255) ccAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGaa < 2:762208/140‑1 (MQ=255) cAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGcc < 1:482966/124‑1 (MQ=255) cAATAATCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGcc > 2:482966/1‑124 (MQ=255) ataatCAGTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGa < 2:572169/140‑1 (MQ=255) gTAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGt > 1:33618/1‑140 (MQ=255) tAAGCAGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGtt > 1:555949/1‑140 (MQ=255) | TGAATACTATTCACCCAGAGGCATTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTT > NC_000913/3875971‑3876238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |