Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,587,425 | T→C | T104A (ACC→GCC) | ydeQ ← | putative fimbrial adhesin protein YdeQ |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,587,425 | 0 | T | C | 98.5% | 228.4 / ‑5.9 | 66 | T104A (ACC→GCC) | ydeQ | putative fimbrial adhesin protein YdeQ |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (30/35); minor base A (0/1); total (30/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GACTTCCCCCGCTTTTATGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGTCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTTATATGCT > NC_000913/1587291‑1587550 | gACTTCCCCCGCTTTTATGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACat < 2:115506/140‑1 (MQ=255) gACTTCCCCCGCTTTTATGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACat < 1:525977/140‑1 (MQ=255) cTTCCCCCGCTTTTATGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACatta < 1:679307/140‑1 (MQ=255) ttCCCCCGCTTTTATGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACattat < 2:406040/140‑1 (MQ=255) tATGGCAACTCCACCGGCCGCCCCAACTGGTGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAAAATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGACGCATTATTCCAGTACAGCg < 2:31729/140‑1 (MQ=255) tATGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCg < 2:102608/140‑1 (MQ=255) aTGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGa < 2:644188/140‑1 (MQ=255) gACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATc < 1:388766/140‑1 (MQ=255) aCTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACattatt > 2:471332/1‑122 (MQ=255) aCTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACattatt < 1:471332/122‑1 (MQ=255) aCTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATc < 1:503813/136‑1 (MQ=255) aCTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATc > 2:503813/1‑136 (MQ=255) ccACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTtata < 2:727879/140‑1 (MQ=255) cACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTatat > 2:467889/1‑140 (MQ=255) ccagccgccCCAACTGGGGTAATATAGAGTCTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGa < 2:492696/137‑1 (MQ=255) cGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGAc < 2:286890/140‑1 (MQ=255) cGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATCATTCCAGTACAGCGATCCTTTATATGAc < 1:544653/140‑1 (MQ=255) cccAACTGGGGTAATATAGAGTTTTAACGGTAATGACATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAggg > 2:21681/1‑140 (MQ=255) gTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGaa > 1:403387/1‑140 (MQ=255) gTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATT‑CAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGaaa > 2:127537/1‑140 (MQ=255) gagTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGc > 1:332916/1‑140 (MQ=255) gagTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGc > 2:688020/1‑140 (MQ=255) agTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGcc > 2:213004/1‑140 (MQ=255) agTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGcc > 2:778607/1‑140 (MQ=255) ttttAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCtt > 1:545623/1‑140 (MQ=255) tAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTa > 1:131982/1‑140 (MQ=255) tAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTa > 2:698962/1‑140 (MQ=255) tAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTa < 1:213004/140‑1 (MQ=255) tAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTa > 2:366924/1‑140 (MQ=255) tAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTa < 2:219730/140‑1 (MQ=255) cGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCa < 1:688020/140‑1 (MQ=255) gTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTAcc > 2:372537/1‑137 (MQ=255) gTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTAcc < 1:372537/137‑1 (MQ=255) gTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAgg < 2:403387/140‑1 (MQ=255) tAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTAc < 1:488831/135‑1 (MQ=255) tAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTAc > 2:488831/1‑135 (MQ=255) aaTGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGtt > 2:172110/1‑140 (MQ=255) tCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATT‑CAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGAt < 1:127537/140‑1 (MQ=255) cGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGAt < 2:539479/140‑1 (MQ=255) cGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGAt < 2:74663/140‑1 (MQ=255) cGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGAt < 1:661294/140‑1 (MQ=255) cGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGAt < 1:172110/140‑1 (MQ=255) ggTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATc < 1:21681/140‑1 (MQ=255) gtgtCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCa > 1:219041/1‑140 (MQ=255) aaTATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAgc > 1:265803/1‑140 (MQ=255) atatCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAgcc > 2:221976/1‑140 (MQ=255) tatCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAgccg > 2:240813/1‑140 (MQ=255) tatCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAgccg > 2:591343/1‑140 (MQ=255) aaTACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTa < 2:265803/140‑1 (MQ=255) tACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAAt > 2:36884/1‑140 (MQ=255) tGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTc > 2:526080/1‑140 (MQ=255) tGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTc > 2:205472/1‑140 (MQ=255) tGGTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGCACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTc > 2:737439/1‑140 (MQ=255) ggTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTcc < 1:526080/140‑1 (MQ=255) gTATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCa < 1:591343/140‑1 (MQ=255) tATTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAg > 1:608183/1‑140 (MQ=255) aTTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGc < 1:778607/140‑1 (MQ=255) aTTTGTCGTCAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGc < 1:36884/140‑1 (MQ=255) gtcgtcAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACt > 2:691933/1‑140 (MQ=255) gtcAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTtat < 1:221976/140‑1 (MQ=255) tcAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTtata > 2:664256/1‑140 (MQ=255) tcAACGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTtata > 1:246958/1‑140 (MQ=255) aCGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTTATATGc < 1:561803/140‑1 (MQ=255) cGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTTATATGCt < 2:608183/140‑1 (MQ=255) cGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTTATATGCt < 2:246958/140‑1 (MQ=255) cGGGAAGGGGTAGGCCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTTATATGCt < 2:219041/140‑1 (MQ=255) | GACTTCCCCCGCTTTTATGACAACTCCACCGGCCGCCCCAACTGGGGTAATATAGAGTTTTAACGGTAATGGCATCGGTGTCTTATCACCAATATCCAATACGTTGGTATTTGTCGTCAACGGGAAGGGGTAGGTCACATTATTCCAGTACAGCGATCCTTTATATGACTGTAGGGAGCCTGCGAAAGCTGAGCCTTGTACCAGGTTTATATGATCAGTGTCGTACCAGCCGCCGTAATCATTCCAGCAACTTATATGCT > NC_000913/1587291‑1587550 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |