| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,562,458 | A→G | R8R (CGT→CGC) | ddpA ← | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,562,458 | 0 | A | G | 97.8% | 153.0 / ‑3.2 | 45 | coding (24/1551 nt) | ddpA | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (17/27); minor base . (1/0); total (18/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
AGTCGTTATTATCTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGACGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTGGGGTAATTCGAAGTGCCACC > NC_000913/1562322‑1562589 | aGTCGTTATTATCTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGa > 2:70624/1‑140 (MQ=255) attatCTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGCACGGCGGCGTGCGCAACCGGGGAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGata > 1:79164/1‑140 (MQ=255) ttatCTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGatat < 2:918165/140‑1 (MQ=255) atCTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCg < 1:70624/140‑1 (MQ=255) cTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGata > 1:167848/1‑135 (MQ=255) cTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGata < 2:167848/135‑1 (MQ=255) cTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGAt < 1:895406/140‑1 (MQ=255) cTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGAt < 1:843836/140‑1 (MQ=255) aTTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGTGAGCAATGTGGGGCGAAACGATATCGAtct > 2:296412/1‑140 (MQ=255) tGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGAt < 2:796422/136‑1 (MQ=255) tGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGAt > 1:796422/1‑136 (MQ=255) ttACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTc > 2:600235/1‑140 (MQ=255) aCCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCAt > 1:554087/1‑140 (MQ=255) ccgccgGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATg > 2:169588/1‑140 (MQ=255) gccgGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATC‑TTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACa < 1:567880/140‑1 (MQ=255) ccgGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACa < 1:155826/140‑1 (MQ=255) ccgGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACa < 1:589813/140‑1 (MQ=255) cgGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAg > 2:558472/1‑140 (MQ=255) cgGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAg > 2:333917/1‑140 (MQ=255) cgGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATATCTTCATGACAg > 2:433312/1‑140 (MQ=255) ggTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGAt > 1:554042/1‑140 (MQ=255) gTTTGTGGATAGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGAtt < 1:927630/140‑1 (MQ=255) tgtgGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAAc > 1:473456/1‑140 (MQ=255) cggcggCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTg < 1:537648/140‑1 (MQ=255) cggcCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCtg < 2:424757/140‑1 (MQ=255) cTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCtgtgtg < 2:554042/140‑1 (MQ=255) aCCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCa < 1:600235/140‑1 (MQ=255) cAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAgg < 1:702271/140‑1 (MQ=255) cAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAgg < 2:77706/140‑1 (MQ=255) aGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATaa > 2:629414/1‑140 (MQ=255) cATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATaaaa > 1:798551/1‑140 (MQ=255) atCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACaa < 1:629414/140‑1 (MQ=255) ggcggcGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCa > 1:654380/1‑140 (MQ=255) ggggcgTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAg < 2:79164/138‑1 (MQ=255) gcggcgTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAA‑‑TGGG‑CGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGa > 2:802108/1‑140 (MQ=255) cggcgTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGc < 2:798551/140‑1 (MQ=255) cgTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATATCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAg < 1:433312/140‑1 (MQ=255) tGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCa < 1:733142/140‑1 (MQ=255) gcAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCagag > 2:641054/1‑140 (MQ=255) aaaTTTGTGGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCg < 1:169588/140‑1 (MQ=255) tgGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTg < 1:333917/140‑1 (MQ=255) tgGCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTg < 1:558472/140‑1 (MQ=255) ggCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTgg > 1:350721/1‑140 (MQ=255) gCAAGGACGAGCGCGAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTggg < 2:473456/140‑1 (MQ=255) cgAGCAATGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTGGGGTAATTCGAAGTg < 1:641054/140‑1 (MQ=255) aaTGTGGGGCGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTGGGGTAATTCGAAGTGccacc < 1:576042/140‑1 (MQ=255) | AGTCGTTATTATCTATTGTTACCGCCGGGTCGAGGGTTTGTGGATCGGCGGCCTTACCAATCACCAGCATATCTTTTGGTACGGCGGCGTGCGCAACCGGGAAATTTGTGGCAAGGACGAGCGCGAGCAATGTGGGACGAAACGATATCGATCTCTTCATGACAGTTTCCTGATTAACTGACGTGCTGTGTGCCAGGGGATATAAAACAAGAGAATTGATCAGCGAGCAGAGGGTAACTCGCTGCCTGGGGTAATTCGAAGTGCCACC > NC_000913/1562322‑1562589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |