Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,594,479 A→G pseudogene (3608/5422 nt) yneO ← AIDA‑I family autotransporter YneO

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,594,4790AG100.0% 161.1 / NA 46pseudogene (3608/5422 nt)yneOAIDA‑I family autotransporter YneO
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (22/24);  total (22/24)

CCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCACAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGCAATAT  >  NC_000913/1594341‑1594611
                                                                                                                                          |                                                                                                                                    
ccgctGATACTGTGCGTCATCG‑CCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCcgca                                                                                                                                    <  2:942389/140‑1 (MQ=255)
    tGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAg                                                                                                                                 <  1:525184/140‑1 (MQ=255)
        aCTGTGCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGc                                                                                                                             >  1:296981/1‑140 (MQ=255)
           gtgCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCtat                                                                                                                          >  2:324626/1‑140 (MQ=255)
            tgCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAg                                                                                                                                 <  1:62923/132‑1 (MQ=255)
            tgCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAg                                                                                                                                 >  2:62923/1‑132 (MQ=255)
            tgCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCtatt                                                                                                                         >  1:12174/1‑140 (MQ=255)
            tgCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCtatt                                                                                                                         >  1:925191/1‑140 (MQ=255)
                     gCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATc                                                                                                                <  1:324626/140‑1 (MQ=255)
                        cAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCaa                                                                                                             <  1:233903/140‑1 (MQ=255)
                        cAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCaa                                                                                                             <  2:496215/140‑1 (MQ=255)
                              cGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTAc                                                                                                       >  2:342665/1‑140 (MQ=255)
                                cTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACAt                                                                                                     >  1:821936/1‑140 (MQ=255)
                                    gTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGt                                                                                                 <  1:207044/140‑1 (MQ=255)
                                        agaTGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTg                                                                                             >  1:591846/1‑140 (MQ=255)
                                           tGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCg                                                                                          >  1:742489/1‑140 (MQ=255)
                                                  cAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTgcgc                                                                                   <  2:12174/140‑1 (MQ=255)
                                                  cAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTgcgc                                                                                   <  2:540646/140‑1 (MQ=255)
                                                     gCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTgcgc                                                                                   >  1:875811/1‑137 (MQ=255)
                                                     gCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTgcgc                                                                                   <  2:875811/137‑1 (MQ=255)
                                                     gCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCa                                                                                >  1:339908/1‑140 (MQ=255)
                                                          tattGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGAtg                                                                           <  2:925191/140‑2 (MQ=255)
                                                          tattGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATa                                                                           >  2:323820/1‑140 (MQ=255)
                                                               aTAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCtt                                                                      >  2:545465/1‑140 (MQ=255)
                                                               aTAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCtt                                                                      <  1:342665/140‑1 (MQ=255)
                                                                tAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTc                                                                     <  1:323820/140‑1 (MQ=255)
                                                                    ggAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGc                                                                 <  1:545465/140‑1 (MQ=255)
                                                                      aaGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCtt                                                               >  2:72327/1‑140 (MQ=255)
                                                                       aGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTa                                                              <  2:629172/140‑1 (MQ=255)
                                                                            cACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTa                                                         <  1:374748/140‑1 (MQ=255)
                                                                            cACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTa                                                         <  2:296981/140‑1 (MQ=255)
                                                                            cACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTAGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTa                                                         >  2:435945/1‑140 (MQ=255)
                                                                              cccAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTAtt                                                       >  1:887676/1‑140 (MQ=255)
                                                                                cAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTc                                                                     >  2:322244/1‑124 (MQ=255)
                                                                                cAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTc                                                                     <  1:322244/124‑1 (MQ=255)
                                                                                 aGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACg                                                    <  2:599647/140‑1 (MQ=255)
                                                                                                       tGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGtttttt                              <  2:591846/140‑1 (MQ=255)
                                                                                                          gcgcgcTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGc                           <  2:339908/140‑1 (MQ=255)
                                                                                                           cgcgcTGCCTGTATCAATGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCg                          >  2:924000/1‑140 (MQ=255)
                                                                                                                           aTGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCAtt          <  2:742489/140‑1 (MQ=255)
                                                                                                                            tGTTGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCCTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCCTTg         >  2:504377/1‑140 (MQ=255)
                                                                                                                              ttGAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGc       <  2:887676/140‑1 (MQ=255)
                                                                                                                                gAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGCaa     >  2:441110/1‑140 (MQ=255)
                                                                                                                                gAATTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGCaa     >  1:843770/1‑140 (MQ=255)
                                                                                                                                 aaTTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGCAat    >  1:123675/1‑140 (MQ=255)
                                                                                                                                  aTTGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGCAata   <  1:441110/140‑1 (MQ=255)
                                                                                                                                   ttGCCCCGCAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGCAatat  <  2:123675/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                    
CCGCTGATACTGTGCGTCATCGCCCAGCTACGCTCAGTGGAGATGGTGAGCAGGCCATTATTGATAACGGAAGCATCACCCAGGTTTTTCTGCTCGTTGACGCTGAGCGCGCTGCCTGTATCAATGTTGAATTGCCCCACAAAGCGGCTATTATCGCCATCCAACTCTACATCTGTCCTGGCGGTTGCGCTCACGATACCCTTCCCGCTTATGCTATTACGCAGTTCGCCAGTCACGTTTTTTAGCGTTAACAGACCGTCATTGGCAATAT  >  NC_000913/1594341‑1594611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑