| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 900,696 | (A)6→5 | intergenic (‑121/+170) | artJ ← / ← artM | L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 900,691 | 0 | A | . | 93.8% | 53.9 / ‑2.1 | 16 | intergenic (‑116/+175) | artJ/artM | L‑arginine ABC transporter periplasmic binding protein/L‑arginine ABC transporter membrane subunit ArtM |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (7/8); total (7/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCG > NC_000913/900555‑900820 | ggCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCAGCGGCATGGGATAACAATGCGATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATaaaa < 2:612309/140‑1 (MQ=255) actaactTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGa < 2:287/140‑1 (MQ=255) actaactTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGa < 2:104385/140‑1 (MQ=255) ctaactTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGAc < 1:349022/140‑1 (MQ=255) tGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATtat > 2:518875/1‑140 (MQ=255) cAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAg < 2:116603/140‑1 (MQ=255) ttATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAAttt < 2:329777/140‑1 (MQ=255) tGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATg < 1:589025/140‑1 (MQ=255) aTTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCa < 1:233528/140‑1 (MQ=255) aTTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCa < 1:518875/140‑1 (MQ=255) gCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAgg > 1:445120/1‑140 (MQ=255) gCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATc > 1:389492/1‑140 (MQ=255) ccATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATcc > 2:176054/1‑140 (MQ=255) ttATATGAAATAAACATGATTAAATAATTTAAATGAAA‑AAAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGCCCCCGCCGCATCCGGCACAGGCACCg < 1:45072/140‑1 (MQ=255) atGCAATAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCt > 1:162285/1‑140 (MQ=255) tAAACATGATTAAATAATTTAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTc > 1:354674/1‑140 (MQ=255) agattAAAATAAAAAAAAAAGCCGGACAATTTAGTGGGTTGTCCGTCTTCATTAAAAGATTTTATGCATTATGTAGGCGGGATAGGGCGCCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTgg < 2:243815/137‑1 (MQ=255) ttAAATGAAAT‑AAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGcgcg > 1:64862/1‑140 (MQ=255) | GGCAAGAACTAACTTTTTCATGATGGAACTCCCGTCTGTCAATCTTATGATTTTTGGCCGTGTCTGCGGCATGGGATAACAATGCCATCAAGTGAATTTATATGCAATAAACATGATTAAATAATTTAAATGAAATAAAAAAGACGGACAACTTAGTGGGTTGTCCGTCTTCATTATAAGAATTTATGCACTATGTAGGCCGGATAAGGCGTCCCCGCCGCATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCG > NC_000913/900555‑900820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |