New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	47 (1.310)	48 (1.340)	33/274	0.2	67.3%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
	?	NC_000913	3766087 =	0 (0.000)					coding (3905/4134 nt)	rhsA	rhs element protein RhsA

TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140                                                                                                                                        |                                                                                                                                             tGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTaa                                                                                                                                          >  2:342915/1‑140 (MQ=255) tGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTaa                                                                                                                                          >  2:451897/1‑140 (MQ=255)       cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCg                                                                                                                                    <  2:254914‑M1/11‑1 (MQ=255)         tgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aa                                                                                                                                 <  1:19925‑M1/13‑1 (MQ=255)             agagATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaaaaa                                                                                                                             >  2:9645/1‑140 (MQ=255)             agagATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaaaaa                                                                                                                             >  2:389474/1‑140 (MQ=255)                    gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:45169/1‑140 (MQ=255)                    gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  1:280499/1‑140 (MQ=255)                    gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:587687/1‑140 (MQ=255)                     catctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAc                                                                                                                     <  2:566362‑M1/25‑1 (MQ=255)                     catctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAc                                                                                                                     <  2:45023‑M1/25‑1 (MQ=255)                            cgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTa                                                                                                              <  2:111445‑M1/32‑1 (MQ=255)                             gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAc                                                                                                             <  1:515379‑M1/33‑1 (MQ=255)                                tttGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAcgcg                                                                                                          <  1:126036/140‑1 (MQ=255)                                  ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCt                                                                                                        <  2:478866‑M1/38‑1 (MQ=255)                                  tGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCt                                                                                                        <  1:342915/140‑1 (MQ=255)                                     tcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTtg                                                                                                     <  1:70179‑M1/41‑1 (MQ=255)                                     tCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTtg                                                                                                     >  2:525550/1‑140 (MQ=255)                                               ccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATgg                                                                                           >  1:275257‑M1/90‑140 (MQ=255)                                                  aaaTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGa                                                                                        <  2:210472/140‑1 (MQ=255)                                                     tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACa                                                                                      >  1:597766‑M1/84‑139 (MQ=255)                                                     tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACa                                                                                      <  2:597766‑M1/56‑1 (MQ=255)                                                                    ccTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      <  2:280499/140‑1 (MQ=255)                                                                     cTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCa                                                                     >  1:200800/1‑140 (MQ=255)                                                                       attgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   <  2:342452‑M1/75‑1 (MQ=255)                                                                       aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  2:334095/1‑140 (MQ=255)                                                                       aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  2:242630/1‑140 (MQ=255)                                                                       aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:536762/1‑140 (MQ=255)                                                                       aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:579542/1‑140 (MQ=255)                                                                       aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGAG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:373543/1‑140 (MQ=255)                                                                        ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                                  <  2:148977‑M1/76‑1 (MQ=255)                                                                        atatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  2:408043/135‑1 (MQ=255)                                                                        atatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       >  1:408043/1‑135 (MQ=255)                                                                              cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:15754/1‑140 (MQ=255)                                                                              cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:498218/1‑140 (MQ=255)                                                                              cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:484338/1‑140 (MQ=255)                                                                              cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:363/1‑140 (MQ=255)                                                                              cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:612775/1‑140 (MQ=255)                                                                                cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:410896/1‑140 (MQ=255)                                                                                   tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  1:9645/140‑1 (MQ=255)                                                                                   agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  1:111445‑M1/54‑140 (MQ=255)                                                                                   agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  1:566362‑M1/54‑140 (MQ=255)                                                                                         ccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 <  1:57789‑M1/93‑1 (MQ=255)                                                                                           ctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaa                                               <  2:37864‑M1/95‑1 (MQ=255)                                                                                             gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:172499‑M1/97‑1 (MQ=255)                                                                                             gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:40327‑M1/97‑1 (MQ=255)                                                                                             gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             >  2:23371/1‑140 (MQ=255)                                                                                               gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:400725‑M1/99‑1 (MQ=255)                                                                                               gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  2:57789‑M1/42‑140 (MQ=255)                                                                                                   cccGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        >  2:283264/1‑140 (MQ=255)                                                                                                    caacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                >  2:517465‑M1/37‑130 (MQ=255)                                                                                                    caacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:517465‑M1/94‑1 (MQ=255)                                                                                                    caacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  1:315639‑M1/104‑1 (MQ=255)                                                                                                         tttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaa                                 >  2:384555‑M1/32‑140 (MQ=255)                                                                                                            ccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaagaa                              >  2:515379‑M1/29‑140 (MQ=255)                                                                                                            ccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaagaa                              <  2:400881‑M1/112‑1 (MQ=255)                                                                                                               cgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaa                           <  2:530291‑M1/115‑1 (MQ=255)                                                                                                                      ctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCt                    <  2:613789‑M1/122‑1 (MQ=255)                                                                                                                        atcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  2:5738‑M1/17‑140 (MQ=255)                                                                                                                        atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:334095/140‑1 (MQ=255)                                                                                                                        atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:498218/140‑1 (MQ=255)                                                                                                                          tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:15754/140‑1 (MQ=255)                                                                                                                          tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:363/140‑1 (MQ=255)                                                                                                                          tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:612775/140‑1 (MQ=255)                                                                                                                          tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:579542/140‑1 (MQ=255)                                                                                                                          tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:525550/140‑1 (MQ=255)                                                                                                                          cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:44638‑M1/126‑1 (MQ=255)                                                                                                                          cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:342452‑M1/15‑140 (MQ=255)                                                                                                                          cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:613789‑M1/15‑140 (MQ=255)                                                                                                                          cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:172499‑M1/15‑140 (MQ=255)                                                                                                                           cACTGATAGTATCAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:283264/140‑1 (MQ=255)                                                                                                                            aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCt                    >  2:94054/1‑134 (MQ=255)                                                                                                                            aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCt                    <  1:94054/134‑1 (MQ=255)                                                                                                                             cTGATAGCATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  2:488508/1‑140 (MQ=255)                                                                                                                              gttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:40327‑M1/11‑140 (MQ=255)                                                                                                                              gttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:19925‑M1/11‑140 (MQ=255)                                                                                                                               gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:536762/140‑1 (MQ=255)                                                                                                                                aTAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          >  1:151012/1‑140 (MQ=255)                                                                                                                                 atatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  2:557699‑M1/133‑1 (MQ=255)                                                                                                                                 atatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  2:33827‑M1/133‑1 (MQ=255)                                                                                                                                   atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  1:112720‑M1/135‑1 (MQ=255)                                                                                                                                    tctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  1:45023‑M1/5‑140 (MQ=255)                                                                                                                                    tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  1:103282/1‑140 (MQ=255)                                                                                                                                    tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:313994/140‑1 (MQ=255)                                                                                                                                    tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:313994/1‑140 (MQ=255)                                                                                                                                      tCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:131634/128‑1 (MQ=255)                                                                                                                                      tCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:131634/1‑128 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:448177‑M1/126‑1 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:448177‑M1/2‑127 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:91368‑M1/2‑137 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:91368‑M1/136‑1 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:470386‑M1/139‑1 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:246816‑M1/139‑1 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:605510‑M1/139‑1 (MQ=255)                                                                                                                                       aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:105476‑M1/139‑1 (MQ=255)                                                                                                                                        AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:551468‑M1/140‑1 (MQ=255)                                                                                                                                        AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:456106‑M1/140‑1 (MQ=255)                                                                                                                                        AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:336503‑M1/140‑1 (MQ=255)                                                                                                                                        AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  >  1:488508‑M1/1‑140 (MQ=255)                                                                                                                                        |                                                                                                                                             TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.