mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,462,880 | 1 | . | C | 70.8% | 50.8 / 19.6 | 24 | intergenic (+234/‑132) | fadL/yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| * | NC_000913 | 2,001,918 | 0 | A | C | 50.0% | 4.2 / 10.4 | 16 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,604,344 | 0 | C | T | 48.6% | 16.6 / 29.2 | 37 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.9% | 61.5 / 31.8 | 42 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,326,450 | 0 | T | G | 23.8% | 87.1 / 14.2 | 42 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 919,962 | 0 | C | T | 22.6% | 57.9 / 11.5 | 31 | A243V (GCC→GTC) | macA | ABC‑type tripartite efflux pump membrane fusion protein |
| * | NC_000913 | 375,120 | 0 | C | . | 20.0% | 44.4 / 12.3 | 25 | intergenic (+239/‑339) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 31 (0.860) | 8 (0.250) | 8/244 | 2.2 | 19.7% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 38 (1.190) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1397239 = | 40 (1.270) | 5 (0.160) | 5/238 | 3.0 | 11.3% | intergenic (+147/‑126) | insH‑4/ynaJ | IS5 transposase and trans‑activator/DUF2534 domain‑containing protein YnaJ |
| ? | NC_000913 | 1427599 = | NA (NA) | noncoding (1196/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 375059 | NA (NA) | 11 (0.310) +T |
6/274 | 3.0 | NA | noncoding (28/34 nt) | other | REP31c |
| ? | NC_000913 | = 377491 | NA (NA) | noncoding (32/34 nt) | other | REP32d | |||||
| * | ? | NC_000913 | 31970 = | 25 (0.690) | 3 (0.090) | 3/250 | 3.9 | 12.1% | coding (1154/3222 nt) | carB | carbamoyl phosphate synthetase subunit beta |
| ? | NC_000913 | = 170093 | 21 (0.640) | coding (316/798 nt) | fhuC | iron(III) hydroxamate ABC transporter ATP binding subunit | |||||
| * | ? | NC_000913 | 724885 = | 28 (0.780) | 3 (0.090) | 3/262 | 4.0 | 7.7% | coding (95/573 nt) | kdpC | K(+) transporting P‑type ATPase subunit KdpC |
| ? | NC_000913 | = 4311657 | 45 (1.320) | coding (386/936 nt) | alsB | D‑allose ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 374963 | NA (NA) | 3 (0.090) | 3/268 | 4.1 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377387 | NA (NA) | intergenic (+76/+148) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||