| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,572,630 | (T)6→7 | coding (217/1518 nt) | yjiT → | putative uncharacterized protein YjiT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,572,624 | 1 | . | T | 98.0% | 170.7 / ‑3.5 | 49 | coding (211/1518 nt) | yjiT | putative uncharacterized protein YjiT |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (25/23); total (25/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
ACCGGATGGCCGTCCTCTTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTC‑TTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTACCGAAAGGGATGGA > NC_000913/4572494‑4572754 | aCCGGATGGCCGTCCTCTTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTC‑tttttttgc > 2:254264/1‑137 (MQ=255) ccGGATGGCCGTCCTCTTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTC‑tttttttgct < 1:845126/140‑5 (MQ=255) cGGATGGCCGTCCTCTTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTC‑tttttttgctc > 1:664532/1‑135 (MQ=255) ccGTCCTCTTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTgg < 2:34280/140‑1 (MQ=255) ctctTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCg < 1:405584/140‑1 (MQ=255) ctctTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGACTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCg < 2:813009/140‑1 (MQ=255) tctTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGc < 2:286427/140‑1 (MQ=255) tctTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGc < 1:518586/140‑1 (MQ=255) aaTATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTa > 1:730237/1‑140 (MQ=255) tatCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATg < 1:881505/140‑1 (MQ=255) atCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCTTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGa > 2:864509/1‑140 (MQ=255) tCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGaa > 1:721820/1‑140 (MQ=255) aTGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACg > 2:292954/1‑140 (MQ=255) tGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACgg > 2:421797/1‑140 (MQ=255) cAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCa < 1:421797/140‑1 (MQ=255) cAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCa < 2:721820/140‑1 (MQ=255) ccAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATg > 2:117660/1‑140 (MQ=255) ccAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATg > 1:875797/1‑140 (MQ=255) atgatgAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCgg > 2:888488/1‑140 (MQ=255) tgatgaATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGa > 1:688482/1‑140 (MQ=255) atgaATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATg < 2:178324/140‑1 (MQ=255) atatACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACg < 1:349943/140‑1 (MQ=255) atatACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACg < 2:664532/140‑1 (MQ=255) ataCCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTg < 1:877079/140‑1 (MQ=255) ataCCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTg < 1:292954/140‑1 (MQ=255) taCCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTgg < 1:888488/140‑1 (MQ=255) aaTTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTgg < 2:46272/135‑1 (MQ=255) aaTTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTgg > 1:46272/1‑135 (MQ=255) aaTTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGAccc < 1:182976/140‑1 (MQ=255) cAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCtatatata > 2:616925/1‑140 (MQ=255) cTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATaaaa > 2:814661/1‑140 (MQ=255) cGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAg > 2:596905/1‑140 (MQ=255) cGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAg < 1:254264/140‑1 (MQ=255) tGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAggg > 1:813912/1‑140 (MQ=255) aaTCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCAc < 2:813912/140‑1 (MQ=255) aTCTAATATATGTAATAGGGACTTTGCTGCTTTTTTTG‑TTCTTTTTTTTCTGGGAGTGGTACCGGAGGGATTATGAACGGCAAGGGGGAGGGAGGTGGGACCTTATATAAAAAAAATTAGGTATTTCATTCACCGCcaca < 2:43946/140‑1 (MQ=255) tCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACag > 2:814008/1‑140 (MQ=255) tAATATATGTAATAGGGACTTTGCTGCTTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACagag < 1:864509/140‑1 (MQ=255) tAATATATGTAATAGGGACTTTGCTGCCTGTTTTGTTTT‑TTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACagag < 2:875797/140‑1 (MQ=255) tAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACagag < 1:596905/140‑1 (MQ=255) atatatGTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCt < 1:616925/140‑1 (MQ=255) gTAATAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTAc > 2:360081/1‑140 (MQ=255) tAGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATc > 2:48204/1‑140 (MQ=255) aGGGACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCg > 1:118682/1‑140 (MQ=255) ggACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTa > 2:900171/1‑140 (MQ=255) ggACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTa > 2:668492/1‑140 (MQ=255) ggACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTa > 1:918235/1‑140 (MQ=255) ggACTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTa > 1:843835/1‑140 (MQ=255) aCTTTGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTAcc > 2:505823/1‑140 (MQ=255) tttGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTACCGa > 2:753666/1‑140 (MQ=255) tttGCTGCCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTACCGa > 1:476301/1‑140 (MQ=255) gcCTTTTTTGTTTT‑TTTTTTGCTCTGGGTGGTCCCGCAGGGATTATGAACGGCAATGCGGAGGGACGGGGGCCCCTATAAAAAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTACCGAAAGGGa < 2:688482/140‑1 (MQ=255) gcCTGTTTTG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTACCGAAAGGGa < 2:118682/140‑1 (MQ=255) tttttG‑TTCTTTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTACCGAAAGGGATGGa < 1:48204/139‑1 (MQ=255) | ACCGGATGGCCGTCCTCTTTATGAATATCATGCAACCAATGATGAATATACCCAATTAACGCAGCTACTCCGTGCAGTCGGTCAATCACAATCTAATATATGTAATAGGGACTTTGCTGCCTGTTTTG‑TTC‑TTTTTTGCTCTGAGTGGTACCGCAGGGATTATGAACGGCAATGCGGATGGACGTGGGACCCTATATATAAAAAAATAGGGATTTCATTCACCGCCACAGAGCTTGGTACTATCGTACCGAAAGGGATGGA > NC_000913/4572494‑4572754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |