mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,014,240 | 0 | A | G | 66.0% | 57.9 / 46.4 | 53 | T328A (ACA→GCA) | pqiB | intermembrane transport protein PqiB |
| * | NC_000913 | 4,295,929 | 0 | T | C | 65.4% | 21.3 / 20.9 | 26 | intergenic (+135/+507) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,604,344 | 0 | C | T | 39.4% | 36.4 / 15.3 | 33 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,365,631 | 0 | T | C | 38.6% | 48.5 / 75.7 | 70 | intergenic (+76/+71) | yhcE/insH‑10 | putative uncharacterized protein YhcE/IS5 transposase and trans‑activator |
| * | NC_000913 | 3,206,435 | 0 | C | T | 36.4% | 19.4 / 12.3 | 22 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 3,740,909 | 0 | T | G | 33.3% | 80.6 / 17.3 | 48 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate aminotransferase |
| * | NC_000913 | 753,125 | 0 | T | A | 31.0% | 55.4 / 11.2 | 29 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.8% | 66.3 / 39.2 | 52 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,326,450 | 0 | T | G | 30.0% | 47.2 / 15.4 | 30 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,068,173 | 0 | T | G | 27.5% | 135.5 / 22.2 | 69 | G31G (GGT→GGG) | ymdF | conserved protein YmdF |
| * | NC_000913 | 4,442,146 | 0 | A | G | 27.0% | 113.5 / 15.0 | 63 | S11P (TCC→CCC) | msrA | methionine sulfoxide reductase A |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374922 = | NA (NA) | 13 (0.260) | 9/260 | 3.4 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377329 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 608002 | 65 (1.210) | 9 (0.180) | 8/260 | 3.7 | 12.8% | intergenic (+14/‑63) | hokE/insL‑2 | protein HokE/IS186/IS421 transposase |
| ? | NC_000913 | = 609355 | NA (NA) | intergenic (+178/+104) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | 375023 = | NA (NA) | 6 (0.160) | 5/192 | 3.7 | NA | intergenic (+142/‑436) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377530 = | NA (NA) | intergenic (+219/+5) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 16731 | NA (NA) | 15 (0.290) +GTAA |
8/268 | 3.8 | 19.2% | noncoding (1345/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 608002 | 65 (1.210) | intergenic (+14/‑63) | hokE/insL‑2 | protein HokE/IS186/IS421 transposase | |||||
| * | ? | NC_000913 | 15387 = | NA (NA) | 7 (0.160) | 6/224 | 3.8 | 35.0% | noncoding (1/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 16732 = | 13 (0.300) | intergenic (+175/+19) | insL‑1/hokC | IS186/IS421 transposase/protein HokC | |||||
| * | ? | NC_000913 | = 4542690 | 26 (0.490) | 7 (0.140) | 7/258 | 4.0 | 11.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 81 (1.620) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 2518092 = | 60 (1.120) | 7 (0.150) | 6/240 | 4.1 | 13.3% | noncoding (25/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | 2521198 = | 39 (0.840) | noncoding (26/76 nt) | valY | tRNA‑Val | |||||
| * | ? | NC_000913 | 340035 = | NA (NA) | 8 (0.150) | 7/274 | 4.2 | NA | coding (243/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 377322 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 729682 | 32 (0.600) | 6 (0.120) | 6/254 | 4.3 | 17.0% | coding (100/4194 nt) | rhsC | rhs element protein RhsC |
| ? | NC_000913 | = 729841 | 29 (0.590) | coding (259/4194 nt) | rhsC | rhs element protein RhsC | |||||
| * | ? | NC_000913 | 1397239 = | 48 (1.020) | 6 (0.130) | 5/238 | 4.4 | 11.3% | intergenic (+147/‑126) | insH‑4/ynaJ | IS5 transposase and trans‑activator/DUF2534 domain‑containing protein YnaJ |
| ? | NC_000913 | 1427599 = | NA (NA) | noncoding (1196/1196 nt) | IS5 | repeat region | |||||