BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,096,310	(A)_6→5	coding (468/987 nt)	ycdU →	uncharacterized protein YcdU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,096,305	0	A	.	100.0%	486.7 / NA	114	coding (463/987 nt)	ycdU	uncharacterized protein YcdU
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (62/52); total (62/52)

Only 100 of 117 total aligned reads displayed.

TGGGGGCTATACCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCGAAAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCAGTGGTTAACGTTT  >  NC_000913/1096173‑1096439

tGGGGGCTATACCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCGaaaaagta                                                                                                                                 <  1:1354563/140‑4 (MQ=255)

tGGGGGCTATACCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCGaaaaagta                                                                                                                                 <  1:613875/140‑4 (MQ=255)

  ggggCTATACCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTaaa                                                                                                                              >  1:541058/1‑140 (MQ=255)

       tataCCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAAtata                                                                                                                         >  1:1355496/1‑140 (MQ=255)

         taCCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATaaa                                                                                                                       >  2:908311/1‑140 (MQ=255)

         taCCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATaaa                                                                                                                       >  2:28064/1‑140 (MQ=255)

         taCCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATATAGTTACTTGGGCCGATGGTCATCTTTCTGCTGTTTCGGCTGATCAGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGAAAAATATaaa                                                                                                                       >  2:1158938/1‑140 (MQ=255)

            cAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGt                                                                                                                    <  1:1306884/140‑1 (MQ=255)

              gCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCt                                                                                                                  >  1:356254/1‑140 (MQ=255)

              gCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCt                                                                                                                  >  2:1540194/1‑140 (MQ=255)

                 tCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGAc                                                                                                               <  1:908311/140‑1 (MQ=255)

                  cTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACt                                                                                                              <  1:1540194/140‑1 (MQ=255)

                   tACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTc                                                                                                             >  1:1605316/1‑140 (MQ=255)

                   tACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTc                                                                                                             >  1:136698/1‑140 (MQ=255)

                     cccTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGc                                                                                                           >  2:640257/1‑140 (MQ=255)

                         cGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTAtg                                                                                                       >  1:1186827/1‑140 (MQ=255)

                         cGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTAtg                                                                                                       >  1:297665/1‑140 (MQ=255)

                          gTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTAtgt                                                                                                      <  2:1186827/140‑1 (MQ=255)

                          gTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTAtgt                                                                                                      >  1:1282623/1‑140 (MQ=255)

                          gTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTAtgt                                                                                                      >  1:5923/1‑140 (MQ=255)

                          gTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTAtgt                                                                                                      <  2:297665/140‑1 (MQ=255)

                           ttATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACAAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTAtgtg                                                                                                     <  1:1165671/140‑1 (MQ=255)

                            tataTGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGtgc                                                                                                    >  2:332477/1‑140 (MQ=255)

                            tataTGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGtgc                                                                                                    <  1:28064/140‑1 (MQ=255)

                               atGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGc                                                                                                           <  1:458523/130‑1 (MQ=255)

                               atGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGc                                                                                                           >  2:458523/1‑130 (MQ=255)

                                tGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTgctgct                                                                                                >  2:229240/1‑140 (MQ=255)

                                    cTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCt                                                                                                          <  1:1042960/126‑1 (MQ=255)

                                    cTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCg                                                                                            >  2:1192775/1‑140 (MQ=255)

                                    cTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCg                                                                                            >  1:904194/1‑140 (MQ=255)

                                    cTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCg                                                                                            >  2:367017/1‑140 (MQ=255)

                                    cTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCg                                                                                            <  2:594942/140‑1 (MQ=255)

                                    cTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCg                                                                                            >  2:679497/1‑140 (MQ=255)

                                      gTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGgt                                                                                          >  2:1263540/1‑140 (MQ=255)

                                                 cGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCaa                                                                               >  1:200064/1‑140 (MQ=255)

                                                 cGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCaa                                                                               <  1:1263540/140‑1 (MQ=255)

                                                  gTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAAc                                                                              <  2:732329/140‑1 (MQ=255)

                                                           gCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTaa                                                                     >  2:465758/1‑140 (MQ=255)

                                                            ccGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAAc                                                                    >  1:1597521/1‑140 (MQ=255)

                                                            ccGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAAc                                                                    >  2:476927/1‑140 (MQ=255)

                                                            ccGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAAc                                                                    <  2:904194/140‑1 (MQ=255)

                                                             cGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAAcc                                                                   <  2:1388627/140‑1 (MQ=255)

                                                             cGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAAcc                                                                   >  2:597819/1‑140 (MQ=255)

                                                             cGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAAcc                                                                   <  1:1034746/140‑1 (MQ=255)

                                                             cGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAAcc                                                                   <  1:367017/140‑1 (MQ=255)

                                                                tGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGc                                                                >  2:854492/1‑140 (MQ=255)

                                                                 ggTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCt                                                               <  2:773005/140‑1 (MQ=255)

                                                                 ggTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCt                                                               >  2:1250726/1‑140 (MQ=255)

                                                                          tCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAg                                                      >  2:115632/1‑140 (MQ=255)

                                                                           ctgctgTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGc                                                     <  2:1355496/140‑1 (MQ=255)

                                                                            tgctgTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGcc                                                    <  2:541058/140‑1 (MQ=255)

                                                                            tgctgTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGcc                                                    >  1:498255/1‑140 (MQ=255)

                                                                            tgctgTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGcc                                                    >  1:479689/1‑140 (MQ=255)

                                                                              ctgTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTATCCTGCTTACTATCAGCCCg                                                  <  1:640257/140‑1 (MQ=255)

                                                                              ctgTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCg                                                  <  1:1267297/140‑1 (MQ=255)

                                                                                 tttCGGATGATCCGTACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTg                                               >  2:191636/1‑140 (MQ=255)

                                                                                 tttCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCg                                                  <  1:885393/137‑1 (MQ=255)

                                                                                 tttCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCg                                                  >  2:885393/1‑137 (MQ=255)

                                                                                   tCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCg                                             <  1:229240/140‑1 (MQ=255)

                                                                                   tCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCg                                             >  2:6369/1‑140 (MQ=255)

                                                                                    cGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGt                                            <  1:115632/140‑1 (MQ=255)

                                                                                     ggATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTa                                           <  2:1180733/140‑1 (MQ=255)

                                                                                     ggATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTAT‑AGCCCGTTGCGTaa                                          <  1:1016942/140‑1 (MQ=255)

                                                                                           tCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTg                                     >  1:293929/1‑140 (MQ=255)

                                                                                            ccGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGa                                    <  2:614828/140‑1 (MQ=255)

                                                                                             cGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCg                                                  <  2:1335509/125‑1 (MQ=255)

                                                                                             cGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGAt                                   <  1:1364595/140‑1 (MQ=255)

                                                                                               cACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTc                                 <  2:5923/140‑1 (MQ=255)

                                                                                                aCCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCt                                <  2:200064/140‑1 (MQ=255)

                                                                                                    gTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtg                            >  1:56919/1‑140 (MQ=255)

                                                                                                    gTTATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtg                            >  1:400883/1‑140 (MQ=255)

                                                                                                     ttATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtgt                           >  2:162995/1‑140 (MQ=255)

                                                                                                     ttATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtgt                           >  1:1042167/1‑140 (MQ=255)

                                                                                                     ttATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtgt                           >  2:1605248/1‑140 (MQ=255)

                                                                                                     ttATGTCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtgt                           >  2:1211201/1‑140 (MQ=255)

                                                                                                          tCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACag                      >  2:507795/1‑140 (MQ=255)

                                                                                                          tCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACag                      <  1:796735/140‑1 (MQ=255)

                                                                                                          tCAAGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCACGTTGCGTAACAGTGATTCTTTTGTGACag                      <  1:476927/140‑1 (MQ=255)

                                                                                                            aaGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACagag                    <  1:958195/140‑1 (MQ=255)

                                                                                                            aaGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACagag                    <  2:293929/140‑1 (MQ=255)

                                                                                                            aaGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACagag                    >  2:1444300/1‑140 (MQ=255)

                                                                                                            aaGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACagag                    >  2:1126958/1‑140 (MQ=255)

                                                                                                             aGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtgt                           <  1:250808/132‑1 (MQ=255)

                                                                                                             aGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTtgt                           >  2:250808/1‑132 (MQ=255)

                                                                                                             aGCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAgg                   >  1:1601419/1‑140 (MQ=255)

                                                                                                              gCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAggg                  >  1:1531162/1‑140 (MQ=255)

                                                                                                              gCAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAggg                  >  2:822152/1‑140 (MQ=255)

                                                                                                               cAGGTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAgggg                 >  2:359816/1‑140 (MQ=255)

                                                                                                                 ggTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCa               <  2:1042167/140‑1 (MQ=255)

                                                                                                                 ggTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCa               <  2:479689/140‑1 (MQ=255)

                                                                                                                 ggTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCa               <  2:498255/140‑1 (MQ=255)

                                                                                                                 ggTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCa               <  2:1111779/140‑1 (MQ=255)

                                                                                                                  gTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACag                      <  1:1348050/132‑1 (MQ=255)

                                                                                                                  gTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACag                      >  2:1348050/1‑132 (MQ=255)

                                                                                                                  gTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCAg              <  2:1369380/140‑1 (MQ=255)

                                                                                                                  gTCGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCAg              >  1:1369380/1‑140 (MQ=255)

                                                                                                                    cGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAgggg                 >  1:1090152/1‑135 (MQ=255)

                                                                                                                    cGCTATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAgggg                 <  2:1090152/135‑1 (MQ=255)

                                                                                                                       tATTTCAGTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCAGTGGtt         <  2:1531162/140‑1 (MQ=255)

                                                                                                                              gTAGCG‑AAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCAGTGGTTAACGttt  <  1:1605248/140‑1 (MQ=255)

TGGGGGCTATACCAGCTTCTACCCTCGTTATATGCGCTGTTCCTGATTTCGTTACTTGGGCCGTTGGTCATCTTTCTGCTGTTTCGGATGATCCGCACCAGTTATGTCAAGCAGGTCGCTATTTCAGTAGCGAAAAAAGTAAAATATAAAAGTCTGACTCGCTATGTGCTGCTTTCGGTGTGCATCTCAACGGTTGTTAACCTGCTTACTATCAGCCCGTTGCGTAACAGTGATTCTTTTGTGACAGAGGGGCAGTGGTTAACGTTT  >  NC_000913/1096173‑1096439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`