BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,005,893	C→T	Q61* (CAG→TAG)	fliT →	flagellar biosynthesis protein FliT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,005,893	0	C	T	100.0%	367.1 / NA	102	Q61* (CAG→TAG)	fliT	flagellar biosynthesis protein FliT
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (43/59); total (43/59)

Only 100 of 102 total aligned reads displayed.

CGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGCCT  >  NC_000913/2005757‑2006028

cgAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAgg                                                                                                                                      >  1:1489609/1‑140 (MQ=255)

            gCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGcc                                                                                                                          <  2:1499687/140‑1 (MQ=255)

             cTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGccc                                                                                                                         >  1:334186/1‑140 (MQ=255)

             cTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGccc                                                                                                                         >  1:288457/1‑140 (MQ=255)

                 tGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGAtg                                                                                                                     <  2:1134760/140‑1 (MQ=255)

                 tGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGAtg                                                                                                                     <  1:97079/140‑1 (MQ=255)

                   ttACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGAtgct                                                                                                                   <  2:586042/140‑1 (MQ=255)

                   ttACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGAtgct                                                                                                                   <  2:1129674/140‑1 (MQ=255)

                       gCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTgcgc                                                                                                               >  2:1525878/1‑140 (MQ=255)

                       gCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTgcgc                                                                                                               >  1:302364/1‑140 (MQ=255)

                        ccTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGcc                                                                                                              <  2:1070003/140‑1 (MQ=255)

                            gCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGAt                                                                                                          >  1:1575535/1‑140 (MQ=255)

                            gCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGAt                                                                                                          >  1:187987/1‑140 (MQ=255)

                             cAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGAtt                                                                                                         <  2:1170915/140‑1 (MQ=255)

                                     gaaCAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACaa                                                                                                 >  1:736566/1‑140 (MQ=255)

                                     gaaCAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACaa                                                                                                 <  2:1603254/140‑1 (MQ=255)

                                      aaCAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTTACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAAc                                                                                                <  2:1174239/140‑1 (MQ=255)

                                           tGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAg                                                                                           >  1:480380/1‑140 (MQ=255)

                                           tGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAg                                                                                           <  2:1477122/140‑1 (MQ=255)

                                           tGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAg                                                                                           <  2:334186/140‑1 (MQ=255)

                                           tGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAg                                                                                           <  2:983622/140‑1 (MQ=255)

                                           tGGGACGAACTCATCGCCAGCGAAATGGCGTATATGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAg                                                                                           <  2:1312512/140‑1 (MQ=255)

                                            gggACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTCCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGc                                                                                          <  2:1489609/140‑1 (MQ=255)

                                             ggACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCa                                                                                         <  1:621557/140‑1 (MQ=255)

                                             ggACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCa                                                                                         >  1:782388/1‑140 (MQ=255)

                                             ggACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCa                                                                                         <  2:914703/140‑1 (MQ=255)

                                             ggACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCa                                                                                         <  1:1472978/140‑1 (MQ=255)

                                                cGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAg                                                                                           <  1:1177434/135‑1 (MQ=255)

                                                cGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAg                                                                                           >  2:1177434/1‑135 (MQ=255)

                                                  aaCTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTa                                                                                    <  1:511554/140‑1 (MQ=255)

                                                  aaCTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTa                                                                                    >  2:511554/1‑140 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCTCGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  2:1433461/140‑1 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGGGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  2:1424330/140‑1 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  2:373566/140‑1 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  2:288457/140‑1 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  2:253363/140‑1 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  2:197826/140‑1 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  2:480380/140‑1 (MQ=255)

                                                    cTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTaaa                                                                                  <  1:1525878/140‑1 (MQ=255)

                                                       aTCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCa                                                                               <  2:73600/140‑1 (MQ=255)

                                                       aTCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCa                                                                               >  1:219523/1‑140 (MQ=255)

                                                             aGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGttatt                                                                         <  2:187987/140‑1 (MQ=255)

                                                             aGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGttatt                                                                         <  2:1575535/140‑1 (MQ=255)

                                                              gCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGttatta                                                                        <  2:1330056/140‑1 (MQ=255)

                                                               cGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGc                                                                                >  2:634932/1‑131 (MQ=255)

                                                               cGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGc                                                                                <  1:634932/131‑1 (MQ=255)

                                                               cGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTAc                                                                       >  2:1112725/1‑140 (MQ=255)

                                                               cGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTAc                                                                       >  1:447205/1‑140 (MQ=255)

                                                               cGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTAc                                                                       >  1:1468763/1‑140 (MQ=255)

                                                               cGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTAc                                                                       >  2:843531/1‑140 (MQ=255)

                                                                    tGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGAtt                                                                  <  2:447205/140‑1 (MQ=255)

                                                                    tGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGAtt                                                                  <  2:782388/140‑1 (MQ=255)

                                                                           tgtgAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCggatgg                                                           >  1:1406472/1‑140 (MQ=255)

                                                                               aaTGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGttatta                                                                        <  1:459036/123‑1 (MQ=255)

                                                                               aaTGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGttatta                                                                        >  2:459036/1‑123 (MQ=255)

                                                                               aaTGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGa                                                       <  2:1406472/140‑1 (MQ=255)

                                                                               aaTGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGa                                                       <  2:302364/140‑1 (MQ=255)

                                                                                aTGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGaa                                                      <  1:152006/140‑1 (MQ=255)

                                                                                 tGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAAc                                                     >  2:264294/1‑140 (MQ=255)

                                                                                     gTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGc                                                 >  1:368828/1‑140 (MQ=255)

                                                                                     gTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGc                                                 >  1:540803/1‑140 (MQ=255)

                                                                                     gTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGc                                                 >  1:320445/1‑140 (MQ=255)

                                                                                      tGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCg                                                >  1:1305481/1‑140 (MQ=255)

                                                                                      tGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGATATTACAGATTCGGATGGATGAACTGGCg                                                >  2:942441/1‑140 (MQ=255)

                                                                                       gCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGa                                               >  2:250081/1‑140 (MQ=255)

                                                                                              aTTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggt                                        <  2:219523/140‑1 (MQ=255)

                                                                                               ttGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtc                                       <  1:264294/140‑1 (MQ=255)

                                                                                               ttGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtc                                       <  2:320445/140‑1 (MQ=255)

                                                                                                tGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcg                                      >  1:1431627/1‑140 (MQ=255)

                                                                                                tGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcg                                      >  2:1420396/1‑140 (MQ=255)

                                                                                                tGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcg                                      >  2:826868/1‑140 (MQ=255)

                                                                                                  cacaTTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcggt                                    <  2:651510/140‑1 (MQ=255)

                                                                                                  cacaTTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcggt                                    >  2:683848/1‑140 (MQ=255)

                                                                                                  cacaTTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcggt                                    <  1:250081/140‑1 (MQ=255)

                                                                                                  cacaTTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtc                                       >  1:493897/1‑137 (MQ=255)

                                                                                                  cacaTTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtc                                       <  2:493897/137‑1 (MQ=255)

                                                                                                     aTTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcggt                                    >  1:1137380/1‑137 (MQ=255)

                                                                                                     aTTTGACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTggtcggt                                    <  2:1137380/137‑1 (MQ=255)

                                                                                                         gACTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCAt                             <  2:1468763/140‑1 (MQ=255)

                                                                                                          aCTGAAGAGGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATc                            >  1:406094/1‑140 (MQ=255)

                                                                                                                gagGTTGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCa                      <  2:540803/140‑1 (MQ=255)

                                                                                                                    ttGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCaaaaa                  <  1:1420396/140‑1 (MQ=255)

                                                                                                                    ttGACCCGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCaaaaa                  >  1:499993/1‑140 (MQ=255)

                                                                                                                        cccGTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCgg              >  2:745713/1‑140 (MQ=255)

                                                                                                                           gTCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGgtgt           >  2:1472184/1‑140 (MQ=255)

                                                                                                                            tCCACCACGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGtt          >  2:624602/1‑140 (MQ=255)

                                                                                                                             ccaccaCGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTa         >  1:1129050/1‑140 (MQ=255)

                                                                                                                             ccaccaCGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTa         <  1:1226737/140‑1 (MQ=255)

                                                                                                                             ccaccaCGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTa         >  1:1474314/1‑140 (MQ=255)

                                                                                                                             ccaccaCGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTa         <  2:708159/140‑1 (MQ=255)

                                                                                                                             ccaccaCGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTa         >  2:1012232/1‑140 (MQ=255)

                                                                                                                               accacGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAg       <  1:1317816/140‑1 (MQ=255)

                                                                                                                                 cacGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTg     >  2:132516/1‑140 (MQ=255)

                                                                                                                                  acGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGc    <  1:359783/140‑1 (MQ=255)

                                                                                                                                  acGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGc    <  2:499993/140‑1 (MQ=255)

                                                                                                                                  acGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGc    <  2:1305481/140‑1 (MQ=255)

                                                                                                                                  acGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGc    <  2:406094/140‑1 (MQ=255)

                                                                                                                                   cGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCgg              >  1:74699/1‑129 (MQ=255)

                                                                                                                                   cGATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCgg              <  2:74699/129‑1 (MQ=255)

                                                                                                                                    gATGTAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGTAAAAATCGGTGTTAAGTGCCt  <  1:843531/140‑1 (MQ=255)

CGAAAAAAGCCAGCTCATGTTACGCCTGGCAACGGAAGAACAATGGGACGAACTCATCGCCAGCGAAATGGCGTATGTGAATGCGGTGCAGGAGATTGCACATTTGACTGAAGAGGTTGACCCGTCCACCACGATGCAGGAGCAGCTCCGCCCGATGCTGCGCCTGATTCTCGACAACGAAAGCAAGGTAAAGCAGTTATTACAGATTCGGATGGATGAACTGGCGAAACTGGTCGGTCAGTCATCGGTGCAAAAATCGGTGTTAAGTGCCT  >  NC_000913/2005757‑2006028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`