BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,390,319	T→C	V267A (GTT→GCT)	aaeR →	LysR‑type transcriptional regulator AaeR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,390,319	0	T	C	100.0%	356.7 / NA	99	V267A (GTT→GCT)	aaeR	LysR‑type transcriptional regulator AaeR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (43/56); total (43/56)

Only 100 of 104 total aligned reads displayed.

ATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATA  >  NC_000913/3390184‑3390455

aTCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTAt                                                                                                                                      <  1:987302/140‑1 (MQ=255)

aTCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTCCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTAt                                                                                                                                      <  1:1585781/140‑1 (MQ=255)

 tCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATg                                                                                                                                     <  1:1197364/140‑1 (MQ=255)

  ccGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGc                                                                                                                                    <  1:89083/140‑1 (MQ=255)

  ccGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGc                                                                                                                                    <  1:226343/140‑1 (MQ=255)

   cGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCg                                                                                                                                   <  1:330668/140‑1 (MQ=255)

   cGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCg                                                                                                                                   <  2:1507126/140‑1 (MQ=255)

     aTGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGtt                                                                                                                                 >  2:169656/1‑140 (MQ=255)

        aCGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTtata                                                                                                                              <  1:475694/140‑1 (MQ=255)

        aCGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTtata                                                                                                                              >  1:694497/1‑140 (MQ=255)

          gCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTtatat                                                                                                                             <  2:1143144/139‑1 (MQ=255)

          gCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGGGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTtatat                                                                                                                             >  1:1143144/1‑139 (MQ=255)

              gTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGCGCCCCTGATGTGGGTGATCAACGAGATCAATCCTGGGGAGCGGGAGATCCTGCTGCCGCGTTACCAGCCAGATCCACGCCCGGCTTATTCCTTATATACCGa                                                                                                                        >  2:62221/1‑140 (MQ=255)

               tGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGGGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGaa                                                                                                                       >  2:15354/1‑140 (MQ=255)

                    tggctgACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCCGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGa                                                                                                                  >  2:161362/1‑140 (MQ=255)

                        tgACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAg                                                                                                              <  1:1480991/140‑1 (MQ=255)

                        tgACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAg                                                                                                              <  2:775249/140‑1 (MQ=255)

                          aCGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGGGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCt                                                                                                            >  2:1251954/1‑140 (MQ=255)

                           cggcggGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTg                                                                                                           <  1:146175/140‑1 (MQ=255)

                           cggcggGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTg                                                                                                           <  1:455008/140‑1 (MQ=255)

                             gcggGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGcc                                                                                                         <  1:62221/140‑1 (MQ=255)

                               gggTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGc                                                                                                       <  1:169656/140‑1 (MQ=255)

                                ggTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCt                                                                                                      >  1:560106/1‑140 (MQ=255)

                                ggTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCt                                                                                                      >  1:683320/1‑140 (MQ=255)

                                ggTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCt                                                                                                      <  1:902697/140‑1 (MQ=255)

                                ggTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCt                                                                                                      >  1:985759/1‑140 (MQ=255)

                                ggTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCt                                                                                                      >  2:902697/1‑140 (MQ=255)

                                ggTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCt                                                                                                      >  1:1437005/1‑140 (MQ=255)

                                 gTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTg                                                                                                     <  1:377140/140‑1 (MQ=255)

                                 gTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTg                                                                                                     <  1:220676/140‑1 (MQ=255)

                                 gTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTg                                                                                                     <  1:894199/140‑1 (MQ=255)

                                 gTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTg                                                                                                     <  1:655784/140‑1 (MQ=255)

                                 gTGCCGGGATCGCCCACGTGCCGCTGATGTGGGGGATCAACGAGATCAATCGTGGGGGGCTGGGGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTg                                                                                                     >  2:635835/1‑140 (MQ=255)

                                   gCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGaa                                                                                                   <  2:216926/140‑1 (MQ=255)

                                       ggATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTa                                                                                               <  1:416120/140‑1 (MQ=255)

                                        gATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTAc                                                                                              <  2:1145664/140‑1 (MQ=255)

                                           cGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAgg                                                                                           <  1:73744/140‑1 (MQ=255)

                                            gCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTAc                                                                                              >  1:1513130/1‑136 (MQ=255)

                                            gCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTAc                                                                                              <  2:1513130/136‑1 (MQ=255)

                                            gCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGt                                                                                          >  2:636031/1‑140 (MQ=255)

                                            gCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGt                                                                                          <  2:858645/140‑1 (MQ=255)

                                              cTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCg                                                                                        >  2:340809/1‑140 (MQ=255)

                                              cTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCg                                                                                        <  2:1582453/140‑1 (MQ=255)

                                                   tGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGt                                                                                          >  2:553071/1‑133 (MQ=255)

                                                   tGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGt                                                                                          <  1:553071/133‑1 (MQ=255)

                                                   tGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATc                                                                                   <  1:636031/140‑1 (MQ=255)

                                                        cTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTc                                                                              >  1:584909/1‑140 (MQ=255)

                                                        cTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTc                                                                              >  1:181214/1‑140 (MQ=255)

                                                            tgtgGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTg                                                                          <  1:1143760/140‑1 (MQ=255)

                                                                ggTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTg                                                                          >  2:436361/1‑136 (MQ=255)

                                                                ggTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTg                                                                          <  1:436361/136‑1 (MQ=255)

                                                                    aTCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGatta                                                                  >  2:297686/1‑140 (MQ=255)

                                                                     tCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGattat                                                                 >  1:660751/1‑140 (MQ=255)

                                                                     tCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGattat                                                                 >  2:1216191/1‑140 (MQ=255)

                                                                      cAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGattatt                                                                >  1:1234363/1‑140 (MQ=255)

                                                                          gagaTCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTttgt                                                            >  1:174959/1‑140 (MQ=255)

                                                                           agaTCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTttgtt                                                           <  2:78974/140‑1 (MQ=255)

                                                                              tCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAg                                                        <  2:503230/140‑1 (MQ=255)

                                                                              tCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAg                                                        <  2:584909/140‑1 (MQ=255)

                                                                                aaTCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGGAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGt                                                      >  2:1392848/1‑140 (MQ=255)

                                                                                   cGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCgg                                                   >  1:481865/1‑140 (MQ=255)

                                                                                      ggggAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTaa                                                >  1:1373151/1‑140 (MQ=255)

                                                                                       gggAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTaaa                                               >  1:91704/1‑140 (MQ=255)

                                                                                       gggAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTaaa                                               >  2:47762/1‑140 (MQ=255)

                                                                                       gggAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTaaa                                               >  1:593207/1‑140 (MQ=255)

                                                                                            cTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTaa                                                <  1:1273306/134‑1 (MQ=255)

                                                                                            cTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTaa                                                >  2:1273306/1‑134 (MQ=255)

                                                                                            cTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGtt                                          >  2:680688/1‑140 (MQ=255)

                                                                                            cTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGtt                                          >  2:59319/1‑140 (MQ=255)

                                                                                               gagaTCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCa                                       <  2:560106/140‑1 (MQ=255)

                                                                                                        ctgcCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCa                              <  2:694497/140‑1 (MQ=255)

                                                                                                        ctgcCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCa                              >  1:1260700/1‑140 (MQ=255)

                                                                                                         tgcCGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCAc                             >  2:543635/1‑140 (MQ=255)

                                                                                                           ccGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACgg                           >  2:423841/1‑140 (MQ=255)

                                                                                                           ccGCGTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCAGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACgg                           >  2:1432284/1‑140 (MQ=255)

                                                                                                            cgcgTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACggg                          <  1:1266614/140‑1 (MQ=255)

                                                                                                              cgTTACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGgcg                        <  2:91704/140‑1 (MQ=255)

                                                                                                                ttACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGgcg                        >  1:937517/1‑138 (MQ=255)

                                                                                                                ttACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGgcg                        <  2:937517/138‑1 (MQ=255)

                                                                                                                ttACCAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGcgcg                      >  1:1510347/1‑140 (MQ=255)

                                                                                                                   ccAGTCAGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGa                   <  2:1408379/140‑1 (MQ=255)

                                                                                                                         aGATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAgaga             >  2:579518/1‑140 (MQ=255)

                                                                                                                          gATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGaa            <  2:1373151/140‑1 (MQ=255)

                                                                                                                          gATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGaa            <  1:1251954/140‑1 (MQ=255)

                                                                                                                          gATCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGaa            <  2:683320/140‑1 (MQ=255)

                                                                                                                           aTCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAg           >  2:1475942/1‑140 (MQ=255)

                                                                                                                           aTCCACGCCCGGCTTATGCGTTATATACCGAAAAAGAAAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGATAAATTGTTTCAGTAGATGCACGGGCGCGGGAAAGAGAAg           >  2:1419476/1‑140 (MQ=255)

                                                                                                                            tCCACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGt          <  2:392837/140‑1 (MQ=255)

                                                                                                                             ccACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTa         >  2:882919/1‑140 (MQ=255)

                                                                                                                             ccACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTa         <  2:181214/140‑1 (MQ=255)

                                                                                                                             ccACGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTa         >  2:637785/1‑140 (MQ=255)

                                                                                                                               aCGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTagt       <  1:543635/140‑3 (MQ=255)

                                                                                                                               aCGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAt       <  1:1475942/140‑1 (MQ=255)

                                                                                                                               aCGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAt       <  1:59319/140‑1 (MQ=255)

                                                                                                                                cGCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAAtt      >  2:14689/1‑140 (MQ=255)

                                                                                                                                 gCCCGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTc     <  1:579518/140‑1 (MQ=255)

                                                                                                                                   ccGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCat   <  1:1432284/140‑1 (MQ=255)

                                                                                                                                    cGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCata  <  2:322224/140‑1 (MQ=255)

                                                                                                                                    cGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCata  <  1:635835/140‑1 (MQ=255)

                                                                                                                                    cGGCTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCata  <  1:680688/140‑1 (MQ=255)

ATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAAAAAGATAAGCTGCCGCTGAAGGTACAGGTCGTGATCAACTCGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATA  >  NC_000913/3390184‑3390455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`