Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,719,916 C→T intergenic (+148/‑133) yiaG → / → cspA putative DNA‑binding transcriptional regulator YiaG/cold shock protein CspA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,719,9160CT99.2% 425.2 / NA 120intergenic (+148/‑133)yiaG/cspAputative DNA‑binding transcriptional regulator YiaG/cold shock protein CspA
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (62/57);  total (63/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 122 total aligned reads displayed.

TATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGCAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATACACTAT  >  NC_000913/3719783‑3720050
                                                                                                                                     |                                                                                                                                      
  ttGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAgtagtgtagt                                                                                                                                <  1:1235329/140‑1 (MQ=255)
        tttACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCa                                                                                                                          >  2:813953/1‑140 (MQ=255)
        tttACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCa                                                                                                                          >  2:734430/1‑140 (MQ=255)
                  tgatgaCAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCa                                                                                                                >  1:669283/1‑140 (MQ=255)
                  tgatgaCAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCa                                                                                                                >  2:1043096/1‑140 (MQ=255)
                        cAGGCCCGTTTTCCAACCGATTAATCAAAAATATAAAAAATAATTGTTGCATCCCCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGtt                                                                                                          <  2:772893/140‑1 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCt                                                                                                                   <  1:1597734/130‑1 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCt                                                                                                                   >  2:1597734/1‑130 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTa                                                                                                         >  1:183852/1‑140 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTa                                                                                                         >  2:739554/1‑140 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTa                                                                                                         >  1:8693/1‑140 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTa                                                                                                         >  1:918403/1‑140 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTa                                                                                                         >  1:959398/1‑140 (MQ=255)
                         aGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTa                                                                                                         >  2:426849/1‑140 (MQ=255)
                           gACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGtt                                                                                                          >  1:571035/1‑137 (MQ=255)
                           gACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGtt                                                                                                          <  2:571035/137‑1 (MQ=255)
                           gACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATc                                                                                                       >  2:329856/1‑140 (MQ=255)
                           gACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATc                                                                                                       >  1:481497/1‑140 (MQ=255)
                             ccGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGt                                                                                                     <  2:1035606/140‑1 (MQ=255)
                               gTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTg                                                                                                   <  1:1534211/140‑1 (MQ=255)
                                ttttCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAagag                                                                                                            <  2:338684/130‑1 (MQ=255)
                                ttttCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAagag                                                                                                            >  1:338684/1‑130 (MQ=255)
                                ttttCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGa                                                                                                  >  1:1008112/1‑140 (MQ=255)
                                 tttCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGAt                                                                                                 <  1:1019884/140‑1 (MQ=255)
                                      aaCCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATAcccc                                                                                            <  1:340355/140‑1 (MQ=255)
                                          gATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGAt                                                                                                 >  2:1053010/1‑131 (MQ=255)
                                          gATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGAt                                                                                                 <  1:1053010/131‑1 (MQ=255)
                                          gATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGt                                                                                        >  1:759459/1‑140 (MQ=255)
                                          gATAAACCATAAATATAAAAAAAATTTGTTGCATCTCCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGt                                                                                        <  2:669283/140‑1 (MQ=255)
                                          aaTTAATCATAAATATAAAAAATAATTGTTGCACCCCCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGt                                                                                        <  2:722385/139‑1 (MQ=255)
                                            ttAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGAt                                                                                                 <  2:902375/129‑1 (MQ=255)
                                            ttAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGAt                                                                                                 >  1:902375/1‑129 (MQ=255)
                                            ttAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAg                                                                                      >  1:321197/1‑140 (MQ=255)
                                                tCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGca                                                                                  <  1:574091/140‑1 (MQ=255)
                                                tCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGca                                                                                  <  2:1222380/140‑1 (MQ=255)
                                                  aTAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAATGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGcaca                                                                                <  1:1142510/140‑1 (MQ=255)
                                                  aTAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGcaca                                                                                <  2:183852/140‑1 (MQ=255)
                                                  aTAAATATAAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGcaca                                                                                <  2:722303/140‑1 (MQ=255)
                                                   tAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACAt                                                                               >  1:722385/1‑140 (MQ=255)
                                                     aaTATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTc                                                                             >  1:272388/1‑140 (MQ=255)
                                                     aaTATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGCAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTc                                                                             >  2:1407812/1‑140 (MQ=255)
                                                         tGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCttt                                                                         >  1:307245/1‑140 (MQ=255)
                                                         tGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCttt                                                                         >  1:1003957/1‑140 (MQ=255)
                                                         tGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCttt                                                                         >  2:143420/1‑140 (MQ=255)
                                                            aaaaTAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAAc                                                                      <  1:494470/140‑1 (MQ=255)
                                                                  atTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGca                                                                                  >  1:710234/1‑122 (MQ=255)
                                                                  atTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCa                                                                >  1:176333/1‑140 (MQ=255)
                                                                  atTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCa                                                                >  2:437584/1‑140 (MQ=255)
                                                                    tgttgCATCCCCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCaaa                                                              <  2:151809/140‑1 (MQ=255)
                                                                          aTCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGt                                                        >  2:1416691/1‑140 (MQ=255)
                                                                          aTCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGt                                                        >  1:1054632/1‑140 (MQ=255)
                                                                           tCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTa                                                       >  2:869105/1‑140 (MQ=255)
                                                                             aCCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTaaa                                                     <  1:739554/140‑1 (MQ=255)
                                                                              cccGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAg                                                    <  2:918403/140‑1 (MQ=255)
                                                                              cccGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAg                                                    >  1:1479095/1‑140 (MQ=255)
                                                                                     aTGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCa                                             <  1:1018920/140‑1 (MQ=255)
                                                                                     aTGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAAAGCTTCAAAATCTGTAAAGCACGCCa                                             <  2:1003957/140‑1 (MQ=255)
                                                                                       gCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCata                                           <  2:1054632/140‑1 (MQ=255)
                                                                                       gCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCata                                           <  1:1043096/140‑1 (MQ=255)
                                                                                        cGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGcc                                              <  1:787833/136‑1 (MQ=255)
                                                                                        cGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGcc                                              >  2:787833/1‑136 (MQ=255)
                                                                                          tGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCg                                        >  2:706477/1‑140 (MQ=255)
                                                                                           ggCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGc                                       >  1:302922/1‑140 (MQ=255)
                                                                                            gCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGcc                                      <  2:8693/140‑1 (MQ=255)
                                                                                             cTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCg                                     >  1:792904/1‑140 (MQ=255)
                                                                                             cTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACAGTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCg                                     >  2:1486579/1‑140 (MQ=255)
                                                                                               tAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGaa                                   <  1:1416691/140‑1 (MQ=255)
                                                                                               tAATGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGaa                                   <  1:155507/140‑1 (MQ=255)
                                                                                                 aTGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAg                                 >  1:1452037/1‑140 (MQ=255)
                                                                                                  tGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAgg                                <  1:1111757/140‑1 (MQ=255)
                                                                                                  tGCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAgg                                <  2:272388/140‑1 (MQ=255)
                                                                                                   gCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGc                               <  1:1544020/140‑1 (MQ=255)
                                                                                                   gCACATCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGc                               <  1:734430/140‑1 (MQ=255)
                                                                                                    cacaTCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGca                              <  1:437584/140‑1 (MQ=255)
                                                                                                    cacaTCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGca                              <  1:813953/140‑1 (MQ=255)
                                                                                                      caTCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGcaca                            <  2:302922/140‑1 (MQ=255)
                                                                                                       aTCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAgg                                >  2:768543/1‑135 (MQ=255)
                                                                                                       aTCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCacac                           <  2:792904/140‑1 (MQ=255)
                                                                                                       aTCAACGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCacac                           >  1:1029204/1‑140 (MQ=255)
                                                                                                           aCGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTaa                       >  1:1572788/1‑140 (MQ=255)
                                                                                                            cGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGca                              <  1:339141/132‑1 (MQ=255)
                                                                                                            cGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTa                        >  1:455728/1‑138 (MQ=255)
                                                                                                            cGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTa                        <  2:455728/138‑1 (MQ=255)
                                                                                                            cGGTTTGACGTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAat                      >  1:1433602/1‑140 (MQ=255)
                                                                                                                     gTACAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAgg             <  2:542941/140‑1 (MQ=255)
                                                                                                                       aaaGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTa           <  2:1147963/138‑1 (MQ=255)
                                                                                                                        cAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTaa          <  1:1187955/140‑1 (MQ=255)
                                                                                                                        cAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTaa          <  2:1572788/140‑1 (MQ=255)
                                                                                                                        cAGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTaa          <  2:17736/140‑1 (MQ=255)
                                                                                                                         aGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAAt         <  2:1479095/140‑1 (MQ=255)
                                                                                                                         aGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAAt         >  2:40709/1‑140 (MQ=255)
                                                                                                                         aGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAAt         >  2:1523087/1‑140 (MQ=255)
                                                                                                                         aGACCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAAt         >  2:138472/1‑140 (MQ=255)
                                                                                                                           aCCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATac       >  1:269057/1‑140 (MQ=255)
                                                                                                                           aCCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATac       >  1:435363/1‑140 (MQ=255)
                                                                                                                           aCCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATac       >  1:788292/1‑140 (MQ=255)
                                                                                                                           aCCATTAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCCTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATac       >  2:231069/1‑140 (MQ=255)
                                                                                                                               ttAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAgg             >  2:633039/1‑130 (MQ=255)
                                                                                                                               ttAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAgg             <  1:633039/130‑1 (MQ=255)
                                                                                                                                tAAAGTAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATACACTAt  >  1:345564/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                      
TATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTACAGACCATTAAAGCAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATACACTAT  >  NC_000913/3719783‑3720050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: