Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,229,203 | (C)5→4 | intergenic (+138/+235) | yohP → / ← dusC | putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,229,199 | 0 | C | . | 96.5% | 189.0 / 2.8 | 58 | intergenic (+134/+239) | yohP/dusC | putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase |
Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (27/29); minor base T (1/1); total (28/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.51e-01 |
AAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGT > NC_000913/2229065‑2229327 | aaaTTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCGcccctg < 2:98204/140‑3 (MQ=255) aaaTTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCGcccctg < 2:512635/140‑3 (MQ=255) ttaatGTCATCAGGTCCAAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCAccccc < 2:417614/140‑1 (MQ=255) atGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCggg < 1:222308/140‑1 (MQ=255) gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGaa > 1:104844/1‑140 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACaa > 1:1011335/1‑140 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACaa > 1:850407/1‑140 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACaa > 1:50100/1‑140 (MQ=255) cGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACaa > 1:1072026/1‑140 (MQ=255) aaCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgcc > 1:14664/1‑140 (MQ=255) aCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgccg < 2:109764/140‑1 (MQ=255) tatTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGcgcg < 2:415749/140‑1 (MQ=255) ttCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTg < 2:104844/140‑1 (MQ=255) aGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc < 1:39159/140‑1 (MQ=255) gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt < 2:418372/140‑1 (MQ=255) gTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCt < 2:850407/140‑1 (MQ=255) tctctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTc > 2:796434/1‑140 (MQ=255) tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt > 1:1035314/1‑140 (MQ=255) cATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCtt < 2:14664/140‑1 (MQ=255) aTCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 2:50100/140‑1 (MQ=255) tGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa < 1:836766/140‑1 (MQ=255) gcgcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTAc < 1:986271/140‑1 (MQ=255) gcTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCAAACAAAATCGCCGCTGTGCGGTGCCCTCGGCTTATCCCTTACgg > 2:165526/1‑140 (MQ=255) cTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGc > 2:696690/1‑140 (MQ=255) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa > 1:183949/1‑125 (MQ=255) gTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTa < 2:183949/125‑1 (MQ=255) aTGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGt < 2:1011335/140‑1 (MQ=255) cATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgc > 1:715509/1‑140 (MQ=255) cATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgc > 1:1072242/1‑140 (MQ=255) cTTCATATAATCACTTGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg > 2:641714/1‑140 (MQ=255) cTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg > 1:229640/1‑140 (MQ=255) tataATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAc > 2:1021603/1‑140 (MQ=255) ataATCCCTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATAGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 2:663291/140‑1 (MQ=255) ataATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCAAACAAAATCGCCGCTGTGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 1:165526/140‑1 (MQ=255) aaTCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATc < 2:1035314/140‑1 (MQ=21) tCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:746495/134‑1 (MQ=18) tCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa > 1:746495/1‑134 (MQ=18) tCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCC‑TCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATccc > 2:1038284/1‑140 (MQ=16) cTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg < 2:907298/128‑1 (MQ=17) cTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAgg > 1:907298/1‑128 (MQ=17) tGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa < 2:787825/132‑1 (MQ=17) tGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACa > 1:787825/1‑132 (MQ=17) ggCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCCGGTCGGGCGCGAGGGAACATCCCTGTaa > 1:964253/1‑140 (MQ=255) cgcAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa > 1:413748/1‑127 (MQ=17) cgcAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTaa < 2:413748/127‑1 (MQ=17) gAGCGCGCAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAAC‑‑CCCTGTAAAACGCGCCCt < 2:302167/140‑1 (MQ=255) gcgcgcAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:306844/140‑1 (MQ=17) gcgcgcAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:626877/140‑1 (MQ=17) gcgcgcAGGGGGCGGCCAATCGCCGCC‑TCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCt < 1:1038284/140‑1 (MQ=12) cgcAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAg > 2:688273/1‑140 (MQ=17) cgcAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAg > 2:1045424/1‑140 (MQ=17) gcAGGGGGCGGCCATTCGCCGCCG‑CCCCTGCCCCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCC‑GTAAAACGCGCCCTCAGcc < 2:722829/140‑1 (MQ=11) gcAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc < 2:1019444/140‑1 (MQ=17) cAGGGGGCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCTGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:1072026/140‑1 (MQ=12) gggCGGCCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca > 2:136591/1‑140 (MQ=17) ggcggcCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc < 2:744662/134‑1 (MQ=17) ggcggcCAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc > 1:744662/1‑134 (MQ=17) ccAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtg < 2:1072242/140‑1 (MQ=17) cAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca > 2:1129003/1‑133 (MQ=17) cAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcaca < 1:1129003/133‑1 (MQ=17) cAATCGCCGCCG‑CCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAtgt > 1:475169/1‑140 (MQ=17) | AAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAA‑GGAGCGCGCAGGGGGCGGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCATGT > NC_000913/2229065‑2229327 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |