BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,466,276	T→C	pseudogene (885/2518 nt)	ydbA →	putative outer membrane protein, N‑terminal fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,466,276	0	T	C	100.0%	52.9 / NA	22	pseudogene (885/2518 nt)	ydbA	putative outer membrane protein, N‑terminal fragment
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/13); total (9/13)

AAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCA  >  NC_000913/1466139‑1466310

aaaGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGa                                  >  2:911180/1‑140 (MQ=255)

    tGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAg                              >  2:773426/1‑140 (MQ=21)

     gATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAgg                             <  1:773426/140‑1 (MQ=21)

     gATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAgg                             <  1:911180/140‑1 (MQ=255)

       ttCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGcc                           <  1:335864/140‑1 (MQ=19)

        tCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCa                          <  2:1006376/140‑1 (MQ=255)

             aCGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTc                     >  1:526058/1‑140 (MQ=21)

              cGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGGGACAGCGCGACGGTGGCTAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGCCGGCGACCAGGCCATCGGCa                    >  2:320392/1‑140 (MQ=11)

                         aTGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGc         <  1:429986/140‑1 (MQ=21)

                         aTGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGc         <  2:1056679/140‑1 (MQ=16)

                           gTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCga       <  2:7213/140‑1 (MQ=16)

                           gTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCga       >  2:548780/1‑140 (MQ=21)

                             cAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCgaga     >  2:582940/1‑140 (MQ=21)

                             cAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCgaga     <  1:959910/140‑1 (MQ=16)

                              aGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCgag      <  1:1212168/138‑1 (MQ=16)

                              aGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCgag      >  2:1212168/1‑138 (MQ=21)

                              aGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGagag    >  2:355574/1‑140 (MQ=21)

                              aGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGagag    >  1:746310/1‑140 (MQ=21)

                                cggcggcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGc         >  2:1144334/1‑133 (MQ=21)

                                cggcggcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGc         <  1:1144334/133‑1 (MQ=16)

                                cggcggcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCa  <  2:1027190/140‑1 (MQ=16)

                                cggcggcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCa  <  1:276840/140‑1 (MQ=16)

                                  gcggcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGagag    >  2:173056/1‑136 (MQ=21)

                                  gcggcggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGagag    <  1:173056/136‑1 (MQ=16)

AAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCA  >  NC_000913/1466139‑1466310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`